Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
TRAIPQ9BWF2 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC17.08■□□□□ 0.32
TRAIPQ9BWF2 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC17.08■□□□□ 0.32
TRAIPQ9BWF2 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC17.08■□□□□ 0.32
TRAIPQ9BWF2 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
TRAIPQ9BWF2 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC17.08■□□□□ 0.32
TRAIPQ9BWF2 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
TRAIPQ9BWF2 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRAIPQ9BWF2 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
TRAIPQ9BWF2 AC005229.1-201ENST00000392885 409 ntBASIC17.08■□□□□ 0.32
TRAIPQ9BWF2 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRAIPQ9BWF2 RPL28-204ENST00000431533 590 ntTSL 2 BASIC17.08■□□□□ 0.32
TRAIPQ9BWF2 AC234783.1-201ENST00000441761 496 ntBASIC17.08■□□□□ 0.32
TRAIPQ9BWF2 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC17.08■□□□□ 0.32
TRAIPQ9BWF2 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
TRAIPQ9BWF2 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC17.08■□□□□ 0.32
TRAIPQ9BWF2 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
TRAIPQ9BWF2 RPL28-206ENST00000558752 671 ntTSL 3 BASIC17.08■□□□□ 0.32
TRAIPQ9BWF2 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC17.08■□□□□ 0.32
TRAIPQ9BWF2 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC17.08■□□□□ 0.32
TRAIPQ9BWF2 COX11-210ENST00000639671 696 ntBASIC17.08■□□□□ 0.32
TRAIPQ9BWF2 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRAIPQ9BWF2 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRAIPQ9BWF2 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRAIPQ9BWF2 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRAIPQ9BWF2 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
TRAIPQ9BWF2 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC17.08■□□□□ 0.32
TRAIPQ9BWF2 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRAIPQ9BWF2 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRAIPQ9BWF2 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
TRAIPQ9BWF2 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC17.07■□□□□ 0.32
TRAIPQ9BWF2 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
TRAIPQ9BWF2 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
TRAIPQ9BWF2 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
TRAIPQ9BWF2 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAIPQ9BWF2 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAIPQ9BWF2 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
TRAIPQ9BWF2 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAIPQ9BWF2 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC17.07■□□□□ 0.32
TRAIPQ9BWF2 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC17.07■□□□□ 0.32
TRAIPQ9BWF2 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAIPQ9BWF2 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAIPQ9BWF2 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAIPQ9BWF2 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAIPQ9BWF2 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
TRAIPQ9BWF2 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
TRAIPQ9BWF2 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAIPQ9BWF2 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAIPQ9BWF2 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC17.07■□□□□ 0.32
TRAIPQ9BWF2 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC17.07■□□□□ 0.32
TRAIPQ9BWF2 HLA-V-201ENST00000429037 534 ntBASIC17.07■□□□□ 0.32
TRAIPQ9BWF2 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
TRAIPQ9BWF2 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAIPQ9BWF2 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC17.07■□□□□ 0.32
TRAIPQ9BWF2 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC17.07■□□□□ 0.32
TRAIPQ9BWF2 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC17.07■□□□□ 0.32
TRAIPQ9BWF2 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC17.07■□□□□ 0.32
TRAIPQ9BWF2 AC026410.3-201ENST00000514280 936 ntBASIC17.07■□□□□ 0.32
TRAIPQ9BWF2 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC17.07■□□□□ 0.32
TRAIPQ9BWF2 MIR4259-201ENST00000584466 101 ntBASIC17.07■□□□□ 0.32
TRAIPQ9BWF2 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC17.07■□□□□ 0.32
TRAIPQ9BWF2 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
TRAIPQ9BWF2 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC17.07■□□□□ 0.32
TRAIPQ9BWF2 PFAS-212ENST00000625942 396 ntTSL 5 BASIC17.07■□□□□ 0.32
TRAIPQ9BWF2 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAIPQ9BWF2 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
TRAIPQ9BWF2 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAIPQ9BWF2 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAIPQ9BWF2 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC17.07■□□□□ 0.32
TRAIPQ9BWF2 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAIPQ9BWF2 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
TRAIPQ9BWF2 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC17.07■□□□□ 0.32
TRAIPQ9BWF2 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC17.07■□□□□ 0.32
TRAIPQ9BWF2 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAIPQ9BWF2 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAIPQ9BWF2 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
TRAIPQ9BWF2 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
TRAIPQ9BWF2 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC17.07■□□□□ 0.32
TRAIPQ9BWF2 TK1-203ENST00000588734 1681 ntTSL 2 BASIC17.07■□□□□ 0.32
TRAIPQ9BWF2 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC17.07■□□□□ 0.32
TRAIPQ9BWF2 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
TRAIPQ9BWF2 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC17.06■□□□□ 0.32
TRAIPQ9BWF2 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRAIPQ9BWF2 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
TRAIPQ9BWF2 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
TRAIPQ9BWF2 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TRAIPQ9BWF2 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TRAIPQ9BWF2 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRAIPQ9BWF2 AGER-206ENST00000375070 1463 ntTSL 5 BASIC17.06■□□□□ 0.32
TRAIPQ9BWF2 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TRAIPQ9BWF2 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC17.06■□□□□ 0.32
TRAIPQ9BWF2 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC17.06■□□□□ 0.32
TRAIPQ9BWF2 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC17.06■□□□□ 0.32
TRAIPQ9BWF2 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRAIPQ9BWF2 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRAIPQ9BWF2 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TRAIPQ9BWF2 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC17.06■□□□□ 0.32
TRAIPQ9BWF2 AC018665.1-201ENST00000622927 1362 ntBASIC17.06■□□□□ 0.32
TRAIPQ9BWF2 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRAIPQ9BWF2 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms