Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC13.69□□□□□ -0.22
NKX3-1Q99801 RPS8P6-201ENST00000426177 609 ntBASIC13.69□□□□□ -0.22
NKX3-1Q99801 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
NKX3-1Q99801 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC13.69□□□□□ -0.22
NKX3-1Q99801 DNAJB3-201ENST00000446806 729 ntBASIC13.69□□□□□ -0.22
NKX3-1Q99801 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC13.69□□□□□ -0.22
NKX3-1Q99801 AC074386.1-202ENST00000463561 864 ntBASIC13.69□□□□□ -0.22
NKX3-1Q99801 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC13.69□□□□□ -0.22
NKX3-1Q99801 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC13.69□□□□□ -0.22
NKX3-1Q99801 PAM16-215ENST00000577031 548 ntTSL 4 BASIC13.69□□□□□ -0.22
NKX3-1Q99801 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
NKX3-1Q99801 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
NKX3-1Q99801 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
NKX3-1Q99801 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
NKX3-1Q99801 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
NKX3-1Q99801 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
NKX3-1Q99801 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC13.69□□□□□ -0.22
NKX3-1Q99801 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
NKX3-1Q99801 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
NKX3-1Q99801 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
NKX3-1Q99801 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC13.69□□□□□ -0.22
NKX3-1Q99801 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
NKX3-1Q99801 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC13.69□□□□□ -0.22
NKX3-1Q99801 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC13.69□□□□□ -0.22
NKX3-1Q99801 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
NKX3-1Q99801 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
NKX3-1Q99801 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
NKX3-1Q99801 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC13.68□□□□□ -0.22
NKX3-1Q99801 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC13.68□□□□□ -0.22
NKX3-1Q99801 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
NKX3-1Q99801 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
NKX3-1Q99801 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
NKX3-1Q99801 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC13.68□□□□□ -0.22
NKX3-1Q99801 AC148477.4-201ENST00000613430 1793 ntBASIC13.68□□□□□ -0.22
NKX3-1Q99801 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC13.68□□□□□ -0.22
NKX3-1Q99801 REM2-202ENST00000536884 1331 ntTSL 2 BASIC13.68□□□□□ -0.22
NKX3-1Q99801 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC13.68□□□□□ -0.22
NKX3-1Q99801 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
NKX3-1Q99801 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
NKX3-1Q99801 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC13.68□□□□□ -0.22
NKX3-1Q99801 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
NKX3-1Q99801 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
NKX3-1Q99801 LINC01230-201ENST00000625222 3017 ntBASIC13.68□□□□□ -0.22
NKX3-1Q99801 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
NKX3-1Q99801 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC13.68□□□□□ -0.22
NKX3-1Q99801 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC13.68□□□□□ -0.22
NKX3-1Q99801 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
NKX3-1Q99801 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
NKX3-1Q99801 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
NKX3-1Q99801 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC13.68□□□□□ -0.22
NKX3-1Q99801 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
NKX3-1Q99801 YBX2P1-201ENST00000394192 760 ntBASIC13.68□□□□□ -0.22
NKX3-1Q99801 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
NKX3-1Q99801 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
NKX3-1Q99801 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC13.68□□□□□ -0.22
NKX3-1Q99801 RNA5SP410-201ENST00000516285 106 ntBASIC13.68□□□□□ -0.22
NKX3-1Q99801 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC13.68□□□□□ -0.22
NKX3-1Q99801 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC13.68□□□□□ -0.22
NKX3-1Q99801 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
NKX3-1Q99801 AC243562.2-201ENST00000561247 970 ntBASIC13.68□□□□□ -0.22
NKX3-1Q99801 PDPK2P-202ENST00000562415 1191 ntBASIC13.68□□□□□ -0.22
NKX3-1Q99801 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC13.68□□□□□ -0.22
NKX3-1Q99801 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC13.68□□□□□ -0.22
NKX3-1Q99801 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
NKX3-1Q99801 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC13.68□□□□□ -0.22
NKX3-1Q99801 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC13.68□□□□□ -0.22
NKX3-1Q99801 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC13.68□□□□□ -0.22
NKX3-1Q99801 SPTSSB-204ENST00000617024 1292 ntBASIC13.68□□□□□ -0.22
NKX3-1Q99801 AL691403.2-201ENST00000618460 490 ntBASIC13.68□□□□□ -0.22
NKX3-1Q99801 AL161645.1-201ENST00000622716 1255 ntBASIC13.68□□□□□ -0.22
NKX3-1Q99801 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC13.68□□□□□ -0.22
NKX3-1Q99801 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC13.68□□□□□ -0.22
NKX3-1Q99801 INTS4P1-203ENST00000641008 3683 ntBASIC13.68□□□□□ -0.22
NKX3-1Q99801 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
NKX3-1Q99801 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
NKX3-1Q99801 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
NKX3-1Q99801 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC13.68□□□□□ -0.22
NKX3-1Q99801 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
NKX3-1Q99801 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
NKX3-1Q99801 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
NKX3-1Q99801 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
NKX3-1Q99801 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC13.68□□□□□ -0.22
NKX3-1Q99801 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
NKX3-1Q99801 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC13.68□□□□□ -0.22
NKX3-1Q99801 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
NKX3-1Q99801 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
NKX3-1Q99801 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
NKX3-1Q99801 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
NKX3-1Q99801 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
NKX3-1Q99801 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
NKX3-1Q99801 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
NKX3-1Q99801 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
NKX3-1Q99801 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
NKX3-1Q99801 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
NKX3-1Q99801 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
NKX3-1Q99801 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
NKX3-1Q99801 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC13.67□□□□□ -0.22
NKX3-1Q99801 MYO15B-237ENST00000642007 4893 ntBASIC13.67□□□□□ -0.22
NKX3-1Q99801 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
NKX3-1Q99801 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms