Protein–RNA interactions for Protein: Q96LD4

TRIM47, Tripartite motif-containing protein 47, humanhuman

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47Q96LD4 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
TRIM47Q96LD4 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC18.23■□□□□ 0.51
TRIM47Q96LD4 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
TRIM47Q96LD4 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
TRIM47Q96LD4 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC18.23■□□□□ 0.51
TRIM47Q96LD4 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC18.23■□□□□ 0.51
TRIM47Q96LD4 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC18.23■□□□□ 0.51
TRIM47Q96LD4 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
TRIM47Q96LD4 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC18.23■□□□□ 0.51
TRIM47Q96LD4 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC18.23■□□□□ 0.51
TRIM47Q96LD4 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC18.23■□□□□ 0.51
TRIM47Q96LD4 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC18.23■□□□□ 0.51
TRIM47Q96LD4 AC009486.1-201ENST00000569860 813 ntBASIC18.23■□□□□ 0.51
TRIM47Q96LD4 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC18.23■□□□□ 0.51
TRIM47Q96LD4 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
TRIM47Q96LD4 AL021578.1-201ENST00000613646 709 ntBASIC18.23■□□□□ 0.51
TRIM47Q96LD4 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC18.23■□□□□ 0.51
TRIM47Q96LD4 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC18.23■□□□□ 0.51
TRIM47Q96LD4 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
TRIM47Q96LD4 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
TRIM47Q96LD4 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC18.23■□□□□ 0.51
TRIM47Q96LD4 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TRIM47Q96LD4 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TRIM47Q96LD4 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
TRIM47Q96LD4 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC18.23■□□□□ 0.51
TRIM47Q96LD4 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
TRIM47Q96LD4 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
TRIM47Q96LD4 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
TRIM47Q96LD4 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TRIM47Q96LD4 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
TRIM47Q96LD4 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TRIM47Q96LD4 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM47Q96LD4 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC18.22■□□□□ 0.51
TRIM47Q96LD4 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM47Q96LD4 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM47Q96LD4 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM47Q96LD4 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
TRIM47Q96LD4 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC18.22■□□□□ 0.51
TRIM47Q96LD4 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC18.22■□□□□ 0.51
TRIM47Q96LD4 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM47Q96LD4 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
TRIM47Q96LD4 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
TRIM47Q96LD4 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
TRIM47Q96LD4 TPO-206ENST00000382269 1155 ntTSL 5 BASIC18.22■□□□□ 0.51
TRIM47Q96LD4 OLR1-203ENST00000432556 950 ntTSL 2 BASIC18.22■□□□□ 0.51
TRIM47Q96LD4 AC012441.1-201ENST00000446669 685 ntBASIC18.22■□□□□ 0.51
TRIM47Q96LD4 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC18.22■□□□□ 0.51
TRIM47Q96LD4 FAM86HP-204ENST00000513466 959 ntBASIC18.22■□□□□ 0.51
TRIM47Q96LD4 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC18.22■□□□□ 0.51
TRIM47Q96LD4 KRT90P-201ENST00000549264 1064 ntBASIC18.22■□□□□ 0.51
TRIM47Q96LD4 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC18.22■□□□□ 0.51
TRIM47Q96LD4 COG4-212ENST00000564653 590 ntTSL 5 BASIC18.22■□□□□ 0.51
TRIM47Q96LD4 AC120045.2-201ENST00000567334 178 ntBASIC18.22■□□□□ 0.51
TRIM47Q96LD4 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC18.22■□□□□ 0.51
TRIM47Q96LD4 ATF5-205ENST00000600336 682 ntTSL 2 BASIC18.22■□□□□ 0.51
TRIM47Q96LD4 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
TRIM47Q96LD4 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC18.22■□□□□ 0.51
TRIM47Q96LD4 RHOXF1P1-202ENST00000635473 501 ntBASIC18.22■□□□□ 0.51
TRIM47Q96LD4 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM47Q96LD4 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM47Q96LD4 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC18.22■□□□□ 0.51
TRIM47Q96LD4 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM47Q96LD4 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM47Q96LD4 USE1-206ENST00000595101 1776 ntTSL 2 BASIC18.22■□□□□ 0.51
TRIM47Q96LD4 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM47Q96LD4 AC134312.5-201ENST00000568031 1313 ntBASIC18.22■□□□□ 0.51
TRIM47Q96LD4 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRIM47Q96LD4 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC18.21■□□□□ 0.51
TRIM47Q96LD4 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRIM47Q96LD4 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC18.21■□□□□ 0.51
TRIM47Q96LD4 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRIM47Q96LD4 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRIM47Q96LD4 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRIM47Q96LD4 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
TRIM47Q96LD4 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRIM47Q96LD4 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
TRIM47Q96LD4 RERG-209ENST00000546331 1383 ntTSL 2 BASIC18.21■□□□□ 0.51
TRIM47Q96LD4 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRIM47Q96LD4 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRIM47Q96LD4 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
TRIM47Q96LD4 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRIM47Q96LD4 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
TRIM47Q96LD4 SLC25A24P2-201ENST00000415059 510 ntBASIC18.21■□□□□ 0.51
TRIM47Q96LD4 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC18.21■□□□□ 0.51
TRIM47Q96LD4 ELP6-209ENST00000446787 894 ntTSL 3 BASIC18.21■□□□□ 0.51
TRIM47Q96LD4 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC18.21■□□□□ 0.51
TRIM47Q96LD4 IGHJ2P-201ENST00000454480 60 ntBASIC18.21■□□□□ 0.51
TRIM47Q96LD4 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
TRIM47Q96LD4 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC18.21■□□□□ 0.51
TRIM47Q96LD4 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC18.21■□□□□ 0.51
TRIM47Q96LD4 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
TRIM47Q96LD4 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC18.21■□□□□ 0.51
TRIM47Q96LD4 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
TRIM47Q96LD4 AL049840.4-201ENST00000602422 811 ntBASIC18.21■□□□□ 0.51
TRIM47Q96LD4 AC008687.7-202ENST00000637404 953 ntBASIC18.21■□□□□ 0.51
TRIM47Q96LD4 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
TRIM47Q96LD4 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRIM47Q96LD4 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
TRIM47Q96LD4 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRIM47Q96LD4 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms