Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
DEPDC4Q8N2C3 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
DEPDC4Q8N2C3 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC14.64□□□□□ -0.07
DEPDC4Q8N2C3 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC14.64□□□□□ -0.07
DEPDC4Q8N2C3 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
DEPDC4Q8N2C3 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 KRT8P44-201ENST00000441609 1350 ntBASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 LINC00528-201ENST00000600723 2160 ntBASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 NME2-201ENST00000393183 568 ntTSL 2 BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 FALEC-201ENST00000416894 566 ntTSL 3 BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 HMGN1P19-201ENST00000436976 333 ntBASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 ALG1L5P-201ENST00000482043 771 ntBASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 NAA50-208ENST00000497255 789 ntTSL 5 BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 FAM86C2P-203ENST00000528684 1004 ntBASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 AC091812.2-201ENST00000619081 385 ntBASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
DEPDC4Q8N2C3 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC14.62□□□□□ -0.07
DEPDC4Q8N2C3 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
DEPDC4Q8N2C3 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
DEPDC4Q8N2C3 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
DEPDC4Q8N2C3 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
DEPDC4Q8N2C3 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
DEPDC4Q8N2C3 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
DEPDC4Q8N2C3 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
DEPDC4Q8N2C3 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
DEPDC4Q8N2C3 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
DEPDC4Q8N2C3 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
DEPDC4Q8N2C3 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
DEPDC4Q8N2C3 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
DEPDC4Q8N2C3 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC14.62□□□□□ -0.07
DEPDC4Q8N2C3 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
DEPDC4Q8N2C3 CALHM1-201ENST00000329905 3053 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
DEPDC4Q8N2C3 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC14.62□□□□□ -0.07
DEPDC4Q8N2C3 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC14.62□□□□□ -0.07
DEPDC4Q8N2C3 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
DEPDC4Q8N2C3 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC14.62□□□□□ -0.07
DEPDC4Q8N2C3 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC14.62□□□□□ -0.07
DEPDC4Q8N2C3 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC14.62□□□□□ -0.07
DEPDC4Q8N2C3 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
DEPDC4Q8N2C3 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC14.62□□□□□ -0.07
DEPDC4Q8N2C3 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
DEPDC4Q8N2C3 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
DEPDC4Q8N2C3 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC14.62□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 106.7 ms