Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
BEST3Q8N1M1 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
BEST3Q8N1M1 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
BEST3Q8N1M1 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
BEST3Q8N1M1 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
BEST3Q8N1M1 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
BEST3Q8N1M1 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
BEST3Q8N1M1 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
BEST3Q8N1M1 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC14.52□□□□□ -0.08
BEST3Q8N1M1 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC14.52□□□□□ -0.08
BEST3Q8N1M1 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
BEST3Q8N1M1 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC14.52□□□□□ -0.08
BEST3Q8N1M1 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
BEST3Q8N1M1 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
BEST3Q8N1M1 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC14.52□□□□□ -0.08
BEST3Q8N1M1 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC14.52□□□□□ -0.08
BEST3Q8N1M1 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
BEST3Q8N1M1 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
BEST3Q8N1M1 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC14.52□□□□□ -0.08
BEST3Q8N1M1 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC14.52□□□□□ -0.08
BEST3Q8N1M1 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
BEST3Q8N1M1 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
BEST3Q8N1M1 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.08
BEST3Q8N1M1 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC14.52□□□□□ -0.08
BEST3Q8N1M1 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
BEST3Q8N1M1 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
BEST3Q8N1M1 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC14.52□□□□□ -0.08
BEST3Q8N1M1 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
BEST3Q8N1M1 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
BEST3Q8N1M1 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
BEST3Q8N1M1 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
BEST3Q8N1M1 NSL1-201ENST00000366976 722 ntTSL 2 BASIC14.52□□□□□ -0.09
BEST3Q8N1M1 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
BEST3Q8N1M1 TOMM22P5-201ENST00000416399 439 ntBASIC14.52□□□□□ -0.09
BEST3Q8N1M1 ARSEP1-201ENST00000420443 635 ntBASIC14.52□□□□□ -0.09
BEST3Q8N1M1 ATP5G2P4-201ENST00000442175 420 ntBASIC14.52□□□□□ -0.09
BEST3Q8N1M1 FAM86LP-201ENST00000478302 853 ntBASIC14.52□□□□□ -0.09
BEST3Q8N1M1 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC14.52□□□□□ -0.09
BEST3Q8N1M1 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC14.52□□□□□ -0.09
BEST3Q8N1M1 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC14.52□□□□□ -0.09
BEST3Q8N1M1 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC14.52□□□□□ -0.09
BEST3Q8N1M1 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC14.52□□□□□ -0.09
BEST3Q8N1M1 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC14.52□□□□□ -0.09
BEST3Q8N1M1 IGHV3-71-201ENST00000523324 359 ntBASIC14.52□□□□□ -0.09
BEST3Q8N1M1 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC14.52□□□□□ -0.09
BEST3Q8N1M1 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC14.52□□□□□ -0.09
BEST3Q8N1M1 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC14.52□□□□□ -0.09
BEST3Q8N1M1 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
BEST3Q8N1M1 PAM16-204ENST00000571941 674 ntTSL 3 BASIC14.52□□□□□ -0.09
BEST3Q8N1M1 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
BEST3Q8N1M1 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC14.52□□□□□ -0.09
BEST3Q8N1M1 AC097359.3-201ENST00000603982 1210 ntBASIC14.52□□□□□ -0.09
BEST3Q8N1M1 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
BEST3Q8N1M1 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC14.52□□□□□ -0.09
BEST3Q8N1M1 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
BEST3Q8N1M1 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
BEST3Q8N1M1 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
BEST3Q8N1M1 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC14.52□□□□□ -0.09
BEST3Q8N1M1 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC14.52□□□□□ -0.09
BEST3Q8N1M1 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
BEST3Q8N1M1 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC14.52□□□□□ -0.09
BEST3Q8N1M1 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
BEST3Q8N1M1 LRRFIP1P1-201ENST00000498774 2246 ntBASIC14.51□□□□□ -0.09
BEST3Q8N1M1 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
BEST3Q8N1M1 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC14.51□□□□□ -0.09
BEST3Q8N1M1 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
BEST3Q8N1M1 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
BEST3Q8N1M1 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC14.51□□□□□ -0.09
BEST3Q8N1M1 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
BEST3Q8N1M1 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC14.51□□□□□ -0.09
BEST3Q8N1M1 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
BEST3Q8N1M1 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC14.51□□□□□ -0.09
BEST3Q8N1M1 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
BEST3Q8N1M1 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
BEST3Q8N1M1 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC14.51□□□□□ -0.09
BEST3Q8N1M1 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC14.51□□□□□ -0.09
BEST3Q8N1M1 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
BEST3Q8N1M1 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
BEST3Q8N1M1 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
BEST3Q8N1M1 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC14.51□□□□□ -0.09
BEST3Q8N1M1 TMEM14DP-201ENST00000422205 345 ntBASIC14.51□□□□□ -0.09
BEST3Q8N1M1 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC14.51□□□□□ -0.09
BEST3Q8N1M1 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
BEST3Q8N1M1 AC007389.4-201ENST00000454674 793 ntBASIC14.51□□□□□ -0.09
BEST3Q8N1M1 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC14.51□□□□□ -0.09
BEST3Q8N1M1 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC14.51□□□□□ -0.09
BEST3Q8N1M1 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC14.51□□□□□ -0.09
BEST3Q8N1M1 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC14.51□□□□□ -0.09
BEST3Q8N1M1 AL359881.2-201ENST00000602973 570 ntBASIC14.51□□□□□ -0.09
BEST3Q8N1M1 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
BEST3Q8N1M1 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
BEST3Q8N1M1 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
BEST3Q8N1M1 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
BEST3Q8N1M1 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC14.51□□□□□ -0.09
BEST3Q8N1M1 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC14.51□□□□□ -0.09
BEST3Q8N1M1 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
BEST3Q8N1M1 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC14.51□□□□□ -0.09
BEST3Q8N1M1 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
BEST3Q8N1M1 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC14.51□□□□□ -0.09
BEST3Q8N1M1 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms