Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 SPATA13-203ENST00000382108 8463 ntAPPRIS ALT2 TSL 5 BASIC9.66□□□□□ -0.86
LINC00643Q86TS7 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
LINC00643Q86TS7 AMER3-202ENST00000423981 6172 ntAPPRIS P1 TSL 4 BASIC9.66□□□□□ -0.86
LINC00643Q86TS7 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC9.66□□□□□ -0.86
LINC00643Q86TS7 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
LINC00643Q86TS7 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC9.66□□□□□ -0.86
LINC00643Q86TS7 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
LINC00643Q86TS7 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
LINC00643Q86TS7 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC9.66□□□□□ -0.86
LINC00643Q86TS7 MTMR2-201ENST00000346299 4681 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
LINC00643Q86TS7 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC9.66□□□□□ -0.86
LINC00643Q86TS7 MTMR2-203ENST00000393223 4681 ntTSL 1 (best) BASIC9.66□□□□□ -0.86
LINC00643Q86TS7 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC9.66□□□□□ -0.86
LINC00643Q86TS7 LRCH3-203ENST00000425562 2970 ntAPPRIS ALT2 TSL 5 BASIC9.66□□□□□ -0.86
LINC00643Q86TS7 HLA-F-220ENST00000434407 884 ntBASIC9.66□□□□□ -0.86
LINC00643Q86TS7 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
LINC00643Q86TS7 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC9.66□□□□□ -0.86
LINC00643Q86TS7 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC9.66□□□□□ -0.86
LINC00643Q86TS7 TPT1P11-201ENST00000458482 498 ntBASIC9.66□□□□□ -0.86
LINC00643Q86TS7 REXO2-208ENST00000539754 791 ntTSL 2 BASIC9.66□□□□□ -0.86
LINC00643Q86TS7 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC9.66□□□□□ -0.86
LINC00643Q86TS7 ETFA-216ENST00000560726 942 ntTSL 3 BASIC9.66□□□□□ -0.86
LINC00643Q86TS7 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC9.66□□□□□ -0.86
LINC00643Q86TS7 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC9.66□□□□□ -0.86
LINC00643Q86TS7 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC9.66□□□□□ -0.86
LINC00643Q86TS7 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC9.66□□□□□ -0.86
LINC00643Q86TS7 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC9.66□□□□□ -0.86
LINC00643Q86TS7 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC9.66□□□□□ -0.86
LINC00643Q86TS7 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC9.66□□□□□ -0.86
LINC00643Q86TS7 Six3os1_6.1-201ENST00000620790 196 ntBASIC9.66□□□□□ -0.86
LINC00643Q86TS7 PLEKHG2-203ENST00000425673 8132 ntAPPRIS P2 TSL 2 BASIC9.66□□□□□ -0.86
LINC00643Q86TS7 KY-202ENST00000503669 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC9.66□□□□□ -0.86
LINC00643Q86TS7 POU5F2-201ENST00000606183 8418 ntAPPRIS P1 BASIC9.66□□□□□ -0.86
LINC00643Q86TS7 TUNAR-201ENST00000503525 3197 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
LINC00643Q86TS7 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC9.66□□□□□ -0.86
LINC00643Q86TS7 RAB40A-201ENST00000304236 1969 ntAPPRIS P1 TSL 2 BASIC9.66□□□□□ -0.86
LINC00643Q86TS7 PCDHGB8P-201ENST00000502926 1973 ntBASIC9.66□□□□□ -0.86
LINC00643Q86TS7 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
LINC00643Q86TS7 MATN1-AS1-201ENST00000414532 3925 ntTSL 2 BASIC9.66□□□□□ -0.86
LINC00643Q86TS7 UNC13B-202ENST00000378496 5063 ntTSL 1 (best) BASIC9.66□□□□□ -0.86
LINC00643Q86TS7 ATP2C1-201ENST00000328560 3484 ntTSL 1 (best) BASIC9.66□□□□□ -0.86
LINC00643Q86TS7 BDH1-202ENST00000392378 3455 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
LINC00643Q86TS7 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC9.66□□□□□ -0.86
LINC00643Q86TS7 ZBTB42-201ENST00000342537 3800 ntAPPRIS P1 BASIC9.66□□□□□ -0.86
LINC00643Q86TS7 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC9.66□□□□□ -0.86
LINC00643Q86TS7 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC9.66□□□□□ -0.86
LINC00643Q86TS7 ANGPTL2-202ENST00000373425 3707 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
LINC00643Q86TS7 FGFR1-207ENST00000397103 2953 ntTSL 5 BASIC9.66□□□□□ -0.86
LINC00643Q86TS7 SPATA20-227ENST00000634597 2587 ntAPPRIS ALT1 TSL 5 BASIC9.66□□□□□ -0.86
LINC00643Q86TS7 AC022497.1-201ENST00000624916 3691 ntBASIC9.66□□□□□ -0.86
LINC00643Q86TS7 ZNF862-201ENST00000223210 6950 ntAPPRIS P1 TSL 5 BASIC9.66□□□□□ -0.86
LINC00643Q86TS7 MYO1C-201ENST00000359786 5145 ntTSL 1 (best) BASIC9.66□□□□□ -0.86
LINC00643Q86TS7 AOC3-201ENST00000308423 4026 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
LINC00643Q86TS7 PAX8-204ENST00000397647 3633 ntTSL 1 (best) BASIC9.65□□□□□ -0.86
LINC00643Q86TS7 CHI3L1-201ENST00000255409 1792 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.86
LINC00643Q86TS7 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC9.65□□□□□ -0.86
LINC00643Q86TS7 TSPEAR-AS1-202ENST00000451035 2108 ntTSL 5 BASIC9.65□□□□□ -0.86
LINC00643Q86TS7 AL031714.1-202ENST00000568106 3107 ntTSL 5 BASIC9.65□□□□□ -0.86
LINC00643Q86TS7 METAP1-201ENST00000296411 2791 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.86
LINC00643Q86TS7 AC009093.1-201ENST00000566070 2099 ntTSL 1 (best) BASIC9.65□□□□□ -0.86
LINC00643Q86TS7 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC9.65□□□□□ -0.86
LINC00643Q86TS7 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC9.65□□□□□ -0.86
LINC00643Q86TS7 BCAM-211ENST00000611077 3430 ntTSL 5 BASIC9.65□□□□□ -0.86
LINC00643Q86TS7 OSBPL9-201ENST00000361556 2721 ntTSL 1 (best) BASIC9.65□□□□□ -0.86
LINC00643Q86TS7 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC9.65□□□□□ -0.86
LINC00643Q86TS7 PDGFRB-201ENST00000261799 5717 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.86
LINC00643Q86TS7 SUN2-201ENST00000405018 4022 ntTSL 1 (best) BASIC9.65□□□□□ -0.86
LINC00643Q86TS7 AC097374.2-201ENST00000618617 1306 ntBASIC9.65□□□□□ -0.86
LINC00643Q86TS7 ELP4-203ENST00000395934 1961 ntTSL 1 (best) BASIC9.65□□□□□ -0.86
LINC00643Q86TS7 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC9.65□□□□□ -0.86
LINC00643Q86TS7 CACNA1G-225ENST00000512389 6837 ntAPPRIS ALT2 TSL 1 (best) BASIC9.65□□□□□ -0.86
LINC00643Q86TS7 NPC1-201ENST00000269228 5157 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.86
LINC00643Q86TS7 NBN-203ENST00000409330 4523 ntTSL 5 BASIC9.65□□□□□ -0.86
LINC00643Q86TS7 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC9.65□□□□□ -0.86
LINC00643Q86TS7 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC9.65□□□□□ -0.86
LINC00643Q86TS7 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC9.65□□□□□ -0.86
LINC00643Q86TS7 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.86
LINC00643Q86TS7 GRAMD4P1-201ENST00000435181 1110 ntBASIC9.65□□□□□ -0.86
LINC00643Q86TS7 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC9.65□□□□□ -0.86
LINC00643Q86TS7 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC9.65□□□□□ -0.86
LINC00643Q86TS7 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC9.65□□□□□ -0.86
LINC00643Q86TS7 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC9.65□□□□□ -0.86
LINC00643Q86TS7 STK25P1-201ENST00000585406 838 ntBASIC9.65□□□□□ -0.86
LINC00643Q86TS7 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC9.65□□□□□ -0.86
LINC00643Q86TS7 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC9.65□□□□□ -0.86
LINC00643Q86TS7 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC9.65□□□□□ -0.86
LINC00643Q86TS7 SP2-202ENST00000613139 908 ntTSL 5 BASIC9.65□□□□□ -0.86
LINC00643Q86TS7 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC9.65□□□□□ -0.86
LINC00643Q86TS7 TBC1D22B-201ENST00000373491 3462 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.86
LINC00643Q86TS7 SECISBP2-202ENST00000375807 3462 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.86
LINC00643Q86TS7 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC9.65□□□□□ -0.86
LINC00643Q86TS7 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC9.65□□□□□ -0.86
LINC00643Q86TS7 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC9.65□□□□□ -0.86
LINC00643Q86TS7 SLC38A7-201ENST00000219320 4392 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.86
LINC00643Q86TS7 EPM2AIP1-201ENST00000322716 8126 ntAPPRIS P1 BASIC9.65□□□□□ -0.86
LINC00643Q86TS7 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC9.65□□□□□ -0.86
LINC00643Q86TS7 RAB3D-201ENST00000222120 4273 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.86
LINC00643Q86TS7 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC9.65□□□□□ -0.86
LINC00643Q86TS7 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC9.65□□□□□ -0.86
LINC00643Q86TS7 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC9.65□□□□□ -0.86
Retrieved 100 of 98,524 protein–RNA pairs in 66.3 ms