Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 AMT-204ENST00000427987 1646 ntTSL 5 BASIC10.61□□□□□ -0.71
CSMD3Q7Z407 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC10.61□□□□□ -0.71
CSMD3Q7Z407 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC10.6□□□□□ -0.71
CSMD3Q7Z407 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC10.6□□□□□ -0.71
CSMD3Q7Z407 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC10.6□□□□□ -0.71
CSMD3Q7Z407 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC10.6□□□□□ -0.71
CSMD3Q7Z407 AC015909.3-201ENST00000572855 1794 ntBASIC10.6□□□□□ -0.71
CSMD3Q7Z407 PSMB4-201ENST00000290541 964 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
CSMD3Q7Z407 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
CSMD3Q7Z407 RBM38-204ENST00000371219 760 ntTSL 2 BASIC10.6□□□□□ -0.71
CSMD3Q7Z407 NPPA-201ENST00000376476 728 ntTSL 3 BASIC10.6□□□□□ -0.71
CSMD3Q7Z407 AL139094.1-201ENST00000405549 1188 ntBASIC10.6□□□□□ -0.71
CSMD3Q7Z407 AC010141.1-201ENST00000411585 623 ntBASIC10.6□□□□□ -0.71
CSMD3Q7Z407 AL109767.1-201ENST00000429450 564 ntTSL 4 BASIC10.6□□□□□ -0.71
CSMD3Q7Z407 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC10.6□□□□□ -0.71
CSMD3Q7Z407 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC10.6□□□□□ -0.71
CSMD3Q7Z407 AC011462.2-201ENST00000598887 344 ntTSL 5 BASIC10.6□□□□□ -0.71
CSMD3Q7Z407 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC10.6□□□□□ -0.71
CSMD3Q7Z407 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC10.6□□□□□ -0.71
CSMD3Q7Z407 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
CSMD3Q7Z407 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC10.6□□□□□ -0.71
CSMD3Q7Z407 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
CSMD3Q7Z407 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC10.6□□□□□ -0.71
CSMD3Q7Z407 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC10.6□□□□□ -0.71
CSMD3Q7Z407 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
CSMD3Q7Z407 ISCA2P1-201ENST00000425548 448 ntBASIC10.6□□□□□ -0.71
CSMD3Q7Z407 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC10.6□□□□□ -0.71
CSMD3Q7Z407 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC10.6□□□□□ -0.71
CSMD3Q7Z407 AC105137.3-201ENST00000617588 984 ntBASIC10.6□□□□□ -0.71
CSMD3Q7Z407 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
CSMD3Q7Z407 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC10.6□□□□□ -0.71
CSMD3Q7Z407 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
CSMD3Q7Z407 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
CSMD3Q7Z407 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC10.6□□□□□ -0.71
CSMD3Q7Z407 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
CSMD3Q7Z407 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
CSMD3Q7Z407 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC10.6□□□□□ -0.71
CSMD3Q7Z407 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
CSMD3Q7Z407 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC10.6□□□□□ -0.71
CSMD3Q7Z407 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC10.6□□□□□ -0.71
CSMD3Q7Z407 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
CSMD3Q7Z407 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
CSMD3Q7Z407 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC10.6□□□□□ -0.71
CSMD3Q7Z407 AL645937.2-201ENST00000396808 931 ntBASIC10.6□□□□□ -0.71
CSMD3Q7Z407 NDUFAB1P1-201ENST00000404262 460 ntBASIC10.6□□□□□ -0.71
CSMD3Q7Z407 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC10.6□□□□□ -0.71
CSMD3Q7Z407 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC10.6□□□□□ -0.71
CSMD3Q7Z407 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC10.6□□□□□ -0.71
CSMD3Q7Z407 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC10.6□□□□□ -0.71
CSMD3Q7Z407 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
CSMD3Q7Z407 E2F3P2-201ENST00000447755 1422 ntBASIC10.6□□□□□ -0.71
CSMD3Q7Z407 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC10.6□□□□□ -0.71
CSMD3Q7Z407 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
CSMD3Q7Z407 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC10.6□□□□□ -0.71
CSMD3Q7Z407 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
CSMD3Q7Z407 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
CSMD3Q7Z407 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC10.59□□□□□ -0.71
CSMD3Q7Z407 ANKRD30BP2-201ENST00000435744 1610 ntBASIC10.59□□□□□ -0.71
CSMD3Q7Z407 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC10.59□□□□□ -0.71
CSMD3Q7Z407 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC10.59□□□□□ -0.71
CSMD3Q7Z407 MBLAC2-202ENST00000514906 1936 ntBASIC10.59□□□□□ -0.71
CSMD3Q7Z407 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
CSMD3Q7Z407 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC10.59□□□□□ -0.71
CSMD3Q7Z407 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
CSMD3Q7Z407 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC10.59□□□□□ -0.71
CSMD3Q7Z407 AL008733.1-201ENST00000440516 469 ntTSL 3 BASIC10.59□□□□□ -0.71
CSMD3Q7Z407 RCC2P8-201ENST00000502779 1035 ntBASIC10.59□□□□□ -0.71
CSMD3Q7Z407 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC10.59□□□□□ -0.71
CSMD3Q7Z407 SLC25A21-203ENST00000555449 1023 ntAPPRIS ALT1 TSL 2 BASIC10.59□□□□□ -0.71
CSMD3Q7Z407 PLS3-210ENST00000626746 216 ntTSL 4 BASIC10.59□□□□□ -0.71
CSMD3Q7Z407 PCDHB19P-201ENST00000570871 2371 ntBASIC10.59□□□□□ -0.71
CSMD3Q7Z407 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
CSMD3Q7Z407 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC10.59□□□□□ -0.71
CSMD3Q7Z407 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
CSMD3Q7Z407 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC10.59□□□□□ -0.71
CSMD3Q7Z407 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
CSMD3Q7Z407 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
CSMD3Q7Z407 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
CSMD3Q7Z407 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC10.59□□□□□ -0.71
CSMD3Q7Z407 ZFAND2B-205ENST00000409319 771 ntTSL 2 BASIC10.59□□□□□ -0.71
CSMD3Q7Z407 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC10.59□□□□□ -0.71
CSMD3Q7Z407 AC073150.1-201ENST00000450406 1084 ntBASIC10.59□□□□□ -0.71
CSMD3Q7Z407 AC027237.1-201ENST00000560942 655 ntBASIC10.59□□□□□ -0.71
CSMD3Q7Z407 NPTN-204ENST00000562924 1094 ntTSL 1 (best) BASIC10.59□□□□□ -0.71
CSMD3Q7Z407 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC10.59□□□□□ -0.71
CSMD3Q7Z407 UPF3AP2-202ENST00000578315 730 ntTSL 5 BASIC10.59□□□□□ -0.71
CSMD3Q7Z407 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC10.59□□□□□ -0.71
CSMD3Q7Z407 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC10.59□□□□□ -0.71
CSMD3Q7Z407 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC10.59□□□□□ -0.71
CSMD3Q7Z407 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC10.59□□□□□ -0.71
CSMD3Q7Z407 PRAL-201ENST00000624952 3286 ntBASIC10.59□□□□□ -0.71
CSMD3Q7Z407 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC10.59□□□□□ -0.71
CSMD3Q7Z407 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC10.59□□□□□ -0.71
CSMD3Q7Z407 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
CSMD3Q7Z407 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC10.59□□□□□ -0.71
CSMD3Q7Z407 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC10.59□□□□□ -0.71
CSMD3Q7Z407 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC10.59□□□□□ -0.71
CSMD3Q7Z407 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC10.59□□□□□ -0.71
CSMD3Q7Z407 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC10.59□□□□□ -0.71
CSMD3Q7Z407 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC10.59□□□□□ -0.71
Retrieved 100 of 98,524 protein–RNA pairs in 91.8 ms