Protein–RNA interactions for Protein: Q70EL4

USP43, Ubiquitin carboxyl-terminal hydrolase 43, humanhuman

Predictions only

Length 1,123 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP43Q70EL4 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
USP43Q70EL4 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
USP43Q70EL4 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
USP43Q70EL4 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
USP43Q70EL4 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
USP43Q70EL4 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
USP43Q70EL4 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC14.31□□□□□ -0.12
USP43Q70EL4 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC14.31□□□□□ -0.12
USP43Q70EL4 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC14.31□□□□□ -0.12
USP43Q70EL4 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
USP43Q70EL4 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC14.31□□□□□ -0.12
USP43Q70EL4 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
USP43Q70EL4 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
USP43Q70EL4 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC14.31□□□□□ -0.12
USP43Q70EL4 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC14.31□□□□□ -0.12
USP43Q70EL4 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
USP43Q70EL4 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
USP43Q70EL4 AC079776.2-201ENST00000641154 1609 ntBASIC14.31□□□□□ -0.12
USP43Q70EL4 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
USP43Q70EL4 ARPC4-TTLL3-201ENST00000397256 2466 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
USP43Q70EL4 AC027601.5-201ENST00000624065 2482 ntBASIC14.31□□□□□ -0.12
USP43Q70EL4 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
USP43Q70EL4 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
USP43Q70EL4 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
USP43Q70EL4 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
USP43Q70EL4 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC14.31□□□□□ -0.12
USP43Q70EL4 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
USP43Q70EL4 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
USP43Q70EL4 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
USP43Q70EL4 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC14.31□□□□□ -0.12
USP43Q70EL4 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
USP43Q70EL4 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC14.31□□□□□ -0.12
USP43Q70EL4 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC14.31□□□□□ -0.12
USP43Q70EL4 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
USP43Q70EL4 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC14.31□□□□□ -0.12
USP43Q70EL4 AL355385.1-201ENST00000606123 409 ntBASIC14.31□□□□□ -0.12
USP43Q70EL4 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC14.31□□□□□ -0.12
USP43Q70EL4 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC14.31□□□□□ -0.12
USP43Q70EL4 AC005593.1-201ENST00000624894 515 ntBASIC14.31□□□□□ -0.12
USP43Q70EL4 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC14.31□□□□□ -0.12
USP43Q70EL4 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC14.31□□□□□ -0.12
USP43Q70EL4 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
USP43Q70EL4 DSN1-203ENST00000373750 2233 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
USP43Q70EL4 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
USP43Q70EL4 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC14.31□□□□□ -0.12
USP43Q70EL4 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
USP43Q70EL4 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
USP43Q70EL4 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
USP43Q70EL4 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
USP43Q70EL4 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
USP43Q70EL4 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC14.31□□□□□ -0.12
USP43Q70EL4 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
USP43Q70EL4 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
USP43Q70EL4 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC14.3□□□□□ -0.12
USP43Q70EL4 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC14.3□□□□□ -0.12
USP43Q70EL4 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
USP43Q70EL4 ZNF202-206ENST00000529691 3384 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
USP43Q70EL4 ABLIM2-213ENST00000514025 2974 ntTSL 2 BASIC14.3□□□□□ -0.12
USP43Q70EL4 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
USP43Q70EL4 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
USP43Q70EL4 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
USP43Q70EL4 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
USP43Q70EL4 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
USP43Q70EL4 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC14.3□□□□□ -0.12
USP43Q70EL4 CDK2AP2P3-201ENST00000422476 372 ntBASIC14.3□□□□□ -0.12
USP43Q70EL4 SLC4A1APP2-201ENST00000424054 1259 ntBASIC14.3□□□□□ -0.12
USP43Q70EL4 HMGN1P19-201ENST00000436976 333 ntBASIC14.3□□□□□ -0.12
USP43Q70EL4 AC009947.1-201ENST00000444350 727 ntBASIC14.3□□□□□ -0.12
USP43Q70EL4 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC14.3□□□□□ -0.12
USP43Q70EL4 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC14.3□□□□□ -0.12
USP43Q70EL4 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
USP43Q70EL4 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC14.3□□□□□ -0.12
USP43Q70EL4 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC14.3□□□□□ -0.12
USP43Q70EL4 COPE-211ENST00000600932 1144 ntTSL 5 BASIC14.3□□□□□ -0.12
USP43Q70EL4 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC14.3□□□□□ -0.12
USP43Q70EL4 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
USP43Q70EL4 AC134684.3-201ENST00000641758 218 ntBASIC14.3□□□□□ -0.12
USP43Q70EL4 RNF216-202ENST00000389902 3293 ntAPPRIS P4 TSL 1 (best) BASIC14.3□□□□□ -0.12
USP43Q70EL4 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC14.3□□□□□ -0.12
USP43Q70EL4 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
USP43Q70EL4 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
USP43Q70EL4 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
USP43Q70EL4 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
USP43Q70EL4 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
USP43Q70EL4 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC14.3□□□□□ -0.12
USP43Q70EL4 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
USP43Q70EL4 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
USP43Q70EL4 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
USP43Q70EL4 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC14.3□□□□□ -0.12
USP43Q70EL4 SIGLEC16-201ENST00000599858 1437 ntBASIC14.3□□□□□ -0.12
USP43Q70EL4 LRRC41-208ENST00000617760 2158 ntTSL 5 BASIC14.3□□□□□ -0.12
USP43Q70EL4 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
USP43Q70EL4 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
USP43Q70EL4 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
USP43Q70EL4 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC14.3□□□□□ -0.12
USP43Q70EL4 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC14.3□□□□□ -0.12
USP43Q70EL4 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC14.3□□□□□ -0.12
USP43Q70EL4 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
USP43Q70EL4 CICP17-201ENST00000418553 2377 ntBASIC14.3□□□□□ -0.12
USP43Q70EL4 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC14.3□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms