Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
USP54Q70EL1 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
USP54Q70EL1 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
USP54Q70EL1 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
USP54Q70EL1 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC20.18■□□□□ 0.82
USP54Q70EL1 SNORD3B-2-202ENST00000571722 791 ntBASIC20.18■□□□□ 0.82
USP54Q70EL1 MIR4722-201ENST00000578292 60 ntBASIC20.18■□□□□ 0.82
USP54Q70EL1 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC20.18■□□□□ 0.82
USP54Q70EL1 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC20.18■□□□□ 0.82
USP54Q70EL1 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
USP54Q70EL1 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
USP54Q70EL1 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
USP54Q70EL1 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
USP54Q70EL1 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC20.17■□□□□ 0.82
USP54Q70EL1 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
USP54Q70EL1 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
USP54Q70EL1 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
USP54Q70EL1 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
USP54Q70EL1 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC20.17■□□□□ 0.82
USP54Q70EL1 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
USP54Q70EL1 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC20.17■□□□□ 0.82
USP54Q70EL1 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
USP54Q70EL1 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
USP54Q70EL1 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
USP54Q70EL1 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC20.17■□□□□ 0.82
USP54Q70EL1 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
USP54Q70EL1 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC20.17■□□□□ 0.82
USP54Q70EL1 FTLP1-201ENST00000449155 526 ntBASIC20.17■□□□□ 0.82
USP54Q70EL1 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC20.17■□□□□ 0.82
USP54Q70EL1 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC20.17■□□□□ 0.82
USP54Q70EL1 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
USP54Q70EL1 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC20.17■□□□□ 0.82
USP54Q70EL1 AC006122.1-201ENST00000493323 440 ntBASIC20.17■□□□□ 0.82
USP54Q70EL1 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
USP54Q70EL1 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
USP54Q70EL1 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC20.17■□□□□ 0.82
USP54Q70EL1 STUB1-204ENST00000564370 875 ntTSL 2 BASIC20.17■□□□□ 0.82
USP54Q70EL1 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC20.17■□□□□ 0.82
USP54Q70EL1 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC20.17■□□□□ 0.82
USP54Q70EL1 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC20.17■□□□□ 0.82
USP54Q70EL1 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC20.17■□□□□ 0.82
USP54Q70EL1 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
USP54Q70EL1 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC20.17■□□□□ 0.82
USP54Q70EL1 STRN-202ENST00000379213 2254 ntTSL 5 BASIC20.17■□□□□ 0.82
USP54Q70EL1 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
USP54Q70EL1 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
USP54Q70EL1 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC20.17■□□□□ 0.82
USP54Q70EL1 AC020910.5-201ENST00000623668 1865 ntBASIC20.17■□□□□ 0.82
USP54Q70EL1 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
USP54Q70EL1 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC20.16■□□□□ 0.82
USP54Q70EL1 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC20.16■□□□□ 0.82
USP54Q70EL1 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
USP54Q70EL1 AC073150.1-201ENST00000450406 1084 ntBASIC20.16■□□□□ 0.82
USP54Q70EL1 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC20.16■□□□□ 0.82
USP54Q70EL1 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC20.16■□□□□ 0.82
USP54Q70EL1 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC20.16■□□□□ 0.82
USP54Q70EL1 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC20.16■□□□□ 0.82
USP54Q70EL1 PRKXP1-201ENST00000561423 1122 ntBASIC20.16■□□□□ 0.82
USP54Q70EL1 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
USP54Q70EL1 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
USP54Q70EL1 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
USP54Q70EL1 RNF165-205ENST00000588679 2904 ntBASIC20.16■□□□□ 0.82
USP54Q70EL1 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
USP54Q70EL1 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
USP54Q70EL1 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
USP54Q70EL1 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
USP54Q70EL1 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC20.16■□□□□ 0.82
USP54Q70EL1 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC20.16■□□□□ 0.82
USP54Q70EL1 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
USP54Q70EL1 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
USP54Q70EL1 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC20.16■□□□□ 0.82
USP54Q70EL1 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
USP54Q70EL1 RN7SKP214-201ENST00000364208 315 ntBASIC20.16■□□□□ 0.82
USP54Q70EL1 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC20.16■□□□□ 0.82
USP54Q70EL1 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC20.16■□□□□ 0.82
USP54Q70EL1 AC021723.1-201ENST00000486306 515 ntBASIC20.16■□□□□ 0.82
USP54Q70EL1 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC20.16■□□□□ 0.82
USP54Q70EL1 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
USP54Q70EL1 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
USP54Q70EL1 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC20.15■□□□□ 0.82
USP54Q70EL1 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
USP54Q70EL1 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
USP54Q70EL1 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
USP54Q70EL1 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
USP54Q70EL1 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
USP54Q70EL1 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
USP54Q70EL1 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
USP54Q70EL1 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
USP54Q70EL1 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC20.15■□□□□ 0.82
USP54Q70EL1 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
USP54Q70EL1 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC20.15■□□□□ 0.82
USP54Q70EL1 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC20.15■□□□□ 0.82
USP54Q70EL1 RN7SL181P-201ENST00000462921 277 ntBASIC20.15■□□□□ 0.82
USP54Q70EL1 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
USP54Q70EL1 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
USP54Q70EL1 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC20.15■□□□□ 0.82
USP54Q70EL1 IRF3-215ENST00000596822 823 ntTSL 3 BASIC20.15■□□□□ 0.82
USP54Q70EL1 AC008825.2-201ENST00000603374 718 ntBASIC20.15■□□□□ 0.82
USP54Q70EL1 AC126365.1-201ENST00000578585 1514 ntBASIC20.15■□□□□ 0.82
USP54Q70EL1 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms