Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
SYNE3Q6ZMZ3 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC18.39■□□□□ 0.53
SYNE3Q6ZMZ3 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
SYNE3Q6ZMZ3 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC18.39■□□□□ 0.53
SYNE3Q6ZMZ3 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
SYNE3Q6ZMZ3 NAA60-208ENST00000570819 833 ntTSL 2 BASIC18.39■□□□□ 0.53
SYNE3Q6ZMZ3 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SYNE3Q6ZMZ3 HADH-212ENST00000638621 741 ntTSL 5 BASIC18.39■□□□□ 0.53
SYNE3Q6ZMZ3 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC18.39■□□□□ 0.53
SYNE3Q6ZMZ3 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SYNE3Q6ZMZ3 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC18.39■□□□□ 0.53
SYNE3Q6ZMZ3 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
SYNE3Q6ZMZ3 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SYNE3Q6ZMZ3 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SYNE3Q6ZMZ3 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SYNE3Q6ZMZ3 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC18.39■□□□□ 0.53
SYNE3Q6ZMZ3 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SYNE3Q6ZMZ3 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC18.39■□□□□ 0.53
SYNE3Q6ZMZ3 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC18.39■□□□□ 0.53
SYNE3Q6ZMZ3 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC18.39■□□□□ 0.53
SYNE3Q6ZMZ3 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC18.39■□□□□ 0.53
SYNE3Q6ZMZ3 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
SYNE3Q6ZMZ3 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SYNE3Q6ZMZ3 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SYNE3Q6ZMZ3 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC18.38■□□□□ 0.53
SYNE3Q6ZMZ3 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
SYNE3Q6ZMZ3 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SYNE3Q6ZMZ3 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SYNE3Q6ZMZ3 AP002414.2-201ENST00000591780 3365 ntBASIC18.38■□□□□ 0.53
SYNE3Q6ZMZ3 TMBIM7P-203ENST00000641617 1718 ntBASIC18.38■□□□□ 0.53
SYNE3Q6ZMZ3 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC18.38■□□□□ 0.53
SYNE3Q6ZMZ3 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SYNE3Q6ZMZ3 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC18.38■□□□□ 0.53
SYNE3Q6ZMZ3 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
SYNE3Q6ZMZ3 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SYNE3Q6ZMZ3 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SYNE3Q6ZMZ3 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SYNE3Q6ZMZ3 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
SYNE3Q6ZMZ3 KRT18P64-201ENST00000434946 1219 ntBASIC18.38■□□□□ 0.53
SYNE3Q6ZMZ3 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC18.38■□□□□ 0.53
SYNE3Q6ZMZ3 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC18.38■□□□□ 0.53
SYNE3Q6ZMZ3 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC18.38■□□□□ 0.53
SYNE3Q6ZMZ3 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SYNE3Q6ZMZ3 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
SYNE3Q6ZMZ3 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC18.38■□□□□ 0.53
SYNE3Q6ZMZ3 AC008738.7-201ENST00000609744 511 ntBASIC18.38■□□□□ 0.53
SYNE3Q6ZMZ3 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
SYNE3Q6ZMZ3 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SYNE3Q6ZMZ3 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
SYNE3Q6ZMZ3 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
SYNE3Q6ZMZ3 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
SYNE3Q6ZMZ3 DEK-201ENST00000244776 1441 ntTSL 2 BASIC18.38■□□□□ 0.53
SYNE3Q6ZMZ3 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SYNE3Q6ZMZ3 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SYNE3Q6ZMZ3 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC18.38■□□□□ 0.53
SYNE3Q6ZMZ3 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SYNE3Q6ZMZ3 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
SYNE3Q6ZMZ3 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SYNE3Q6ZMZ3 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SYNE3Q6ZMZ3 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC18.37■□□□□ 0.53
SYNE3Q6ZMZ3 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
SYNE3Q6ZMZ3 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
SYNE3Q6ZMZ3 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SYNE3Q6ZMZ3 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SYNE3Q6ZMZ3 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SYNE3Q6ZMZ3 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC18.37■□□□□ 0.53
SYNE3Q6ZMZ3 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC18.37■□□□□ 0.53
SYNE3Q6ZMZ3 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SYNE3Q6ZMZ3 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SYNE3Q6ZMZ3 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
SYNE3Q6ZMZ3 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SYNE3Q6ZMZ3 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
SYNE3Q6ZMZ3 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC18.37■□□□□ 0.53
SYNE3Q6ZMZ3 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
SYNE3Q6ZMZ3 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SYNE3Q6ZMZ3 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC18.37■□□□□ 0.53
SYNE3Q6ZMZ3 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC18.37■□□□□ 0.53
SYNE3Q6ZMZ3 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC18.37■□□□□ 0.53
SYNE3Q6ZMZ3 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC18.37■□□□□ 0.53
SYNE3Q6ZMZ3 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
SYNE3Q6ZMZ3 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC18.37■□□□□ 0.53
SYNE3Q6ZMZ3 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
SYNE3Q6ZMZ3 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
SYNE3Q6ZMZ3 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
SYNE3Q6ZMZ3 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SYNE3Q6ZMZ3 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SYNE3Q6ZMZ3 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC18.37■□□□□ 0.53
SYNE3Q6ZMZ3 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC18.37■□□□□ 0.53
SYNE3Q6ZMZ3 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
SYNE3Q6ZMZ3 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC18.37■□□□□ 0.53
SYNE3Q6ZMZ3 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC18.37■□□□□ 0.53
SYNE3Q6ZMZ3 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
SYNE3Q6ZMZ3 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC18.37■□□□□ 0.53
SYNE3Q6ZMZ3 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
SYNE3Q6ZMZ3 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SYNE3Q6ZMZ3 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SYNE3Q6ZMZ3 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC18.36■□□□□ 0.53
SYNE3Q6ZMZ3 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SYNE3Q6ZMZ3 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SYNE3Q6ZMZ3 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms