Protein–RNA interactions for Protein: Q6P4E1

CASC4, Protein CASC4, humanhuman

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CASC4Q6P4E1 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CASC4Q6P4E1 ST20-AS1-201ENST00000560255 4223 ntBASIC15.98■□□□□ 0.15
CASC4Q6P4E1 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CASC4Q6P4E1 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CASC4Q6P4E1 AL513477.1-201ENST00000602865 2407 ntBASIC15.98■□□□□ 0.15
CASC4Q6P4E1 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC15.98■□□□□ 0.15
CASC4Q6P4E1 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC15.98■□□□□ 0.15
CASC4Q6P4E1 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CASC4Q6P4E1 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
CASC4Q6P4E1 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
CASC4Q6P4E1 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CASC4Q6P4E1 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
CASC4Q6P4E1 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
CASC4Q6P4E1 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC15.97■□□□□ 0.15
CASC4Q6P4E1 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CASC4Q6P4E1 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CASC4Q6P4E1 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
CASC4Q6P4E1 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CASC4Q6P4E1 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC15.97■□□□□ 0.15
CASC4Q6P4E1 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
CASC4Q6P4E1 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CASC4Q6P4E1 ZEB1-AS1-208ENST00000607166 2503 ntBASIC15.97■□□□□ 0.15
CASC4Q6P4E1 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CASC4Q6P4E1 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CASC4Q6P4E1 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CASC4Q6P4E1 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CASC4Q6P4E1 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CASC4Q6P4E1 AL627223.1-201ENST00000416693 442 ntBASIC15.97■□□□□ 0.15
CASC4Q6P4E1 AL645939.2-201ENST00000427340 991 ntBASIC15.97■□□□□ 0.15
CASC4Q6P4E1 FAM58DP-201ENST00000428076 619 ntBASIC15.97■□□□□ 0.15
CASC4Q6P4E1 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CASC4Q6P4E1 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC15.97■□□□□ 0.15
CASC4Q6P4E1 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC15.97■□□□□ 0.15
CASC4Q6P4E1 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC15.97■□□□□ 0.15
CASC4Q6P4E1 MIR3687-2-201ENST00000577708 61 ntBASIC15.97■□□□□ 0.15
CASC4Q6P4E1 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC15.97■□□□□ 0.15
CASC4Q6P4E1 AL671883.3-201ENST00000603274 991 ntBASIC15.97■□□□□ 0.15
CASC4Q6P4E1 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC15.97■□□□□ 0.15
CASC4Q6P4E1 MIR3687-1-201ENST00000614492 61 ntBASIC15.97■□□□□ 0.15
CASC4Q6P4E1 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC15.97■□□□□ 0.15
CASC4Q6P4E1 HOTTIP_1.1-201ENST00000620415 57 ntBASIC15.97■□□□□ 0.15
CASC4Q6P4E1 AL513210.1-201ENST00000629608 234 ntBASIC15.97■□□□□ 0.15
CASC4Q6P4E1 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CASC4Q6P4E1 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CASC4Q6P4E1 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CASC4Q6P4E1 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CASC4Q6P4E1 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
CASC4Q6P4E1 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CASC4Q6P4E1 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
CASC4Q6P4E1 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
CASC4Q6P4E1 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
CASC4Q6P4E1 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC15.97■□□□□ 0.15
CASC4Q6P4E1 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CASC4Q6P4E1 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
CASC4Q6P4E1 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CASC4Q6P4E1 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
CASC4Q6P4E1 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CASC4Q6P4E1 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CASC4Q6P4E1 AL607033.1-201ENST00000623900 1599 ntBASIC15.96■□□□□ 0.15
CASC4Q6P4E1 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CASC4Q6P4E1 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC15.96■□□□□ 0.15
CASC4Q6P4E1 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CASC4Q6P4E1 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CASC4Q6P4E1 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CASC4Q6P4E1 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CASC4Q6P4E1 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
CASC4Q6P4E1 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
CASC4Q6P4E1 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CASC4Q6P4E1 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CASC4Q6P4E1 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
CASC4Q6P4E1 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
CASC4Q6P4E1 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
CASC4Q6P4E1 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
CASC4Q6P4E1 CD81-202ENST00000381036 880 ntTSL 3 BASIC15.96■□□□□ 0.15
CASC4Q6P4E1 NME2-201ENST00000393183 568 ntTSL 2 BASIC15.96■□□□□ 0.15
CASC4Q6P4E1 AC004461.1-201ENST00000412461 403 ntBASIC15.96■□□□□ 0.15
CASC4Q6P4E1 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC15.96■□□□□ 0.15
CASC4Q6P4E1 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC15.96■□□□□ 0.15
CASC4Q6P4E1 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC15.96■□□□□ 0.15
CASC4Q6P4E1 RBPMS2P1-201ENST00000437762 623 ntBASIC15.96■□□□□ 0.15
CASC4Q6P4E1 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC15.96■□□□□ 0.15
CASC4Q6P4E1 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC15.96■□□□□ 0.15
CASC4Q6P4E1 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC15.96■□□□□ 0.15
CASC4Q6P4E1 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC15.96■□□□□ 0.15
CASC4Q6P4E1 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC15.96■□□□□ 0.15
CASC4Q6P4E1 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC15.96■□□□□ 0.15
CASC4Q6P4E1 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC15.96■□□□□ 0.15
CASC4Q6P4E1 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC15.96■□□□□ 0.15
CASC4Q6P4E1 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CASC4Q6P4E1 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CASC4Q6P4E1 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CASC4Q6P4E1 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CASC4Q6P4E1 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CASC4Q6P4E1 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
CASC4Q6P4E1 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
CASC4Q6P4E1 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CASC4Q6P4E1 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
CASC4Q6P4E1 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
CASC4Q6P4E1 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
CASC4Q6P4E1 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 60.9 ms