Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC18.69■□□□□ 0.58
CCDC88AQ3V6T2 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC18.69■□□□□ 0.58
CCDC88AQ3V6T2 AC007787.1-201ENST00000588095 1583 ntBASIC18.69■□□□□ 0.58
CCDC88AQ3V6T2 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC18.69■□□□□ 0.58
CCDC88AQ3V6T2 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC18.69■□□□□ 0.58
CCDC88AQ3V6T2 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC18.69■□□□□ 0.58
CCDC88AQ3V6T2 RPL37A-203ENST00000427280 698 ntTSL 5 BASIC18.69■□□□□ 0.58
CCDC88AQ3V6T2 RPL37A-206ENST00000456586 401 ntTSL 5 BASIC18.69■□□□□ 0.58
CCDC88AQ3V6T2 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
CCDC88AQ3V6T2 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC18.69■□□□□ 0.58
CCDC88AQ3V6T2 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC88AQ3V6T2 AC005740.2-201ENST00000511085 419 ntBASIC18.69■□□□□ 0.58
CCDC88AQ3V6T2 LY6E-208ENST00000520531 490 ntTSL 2 BASIC18.69■□□□□ 0.58
CCDC88AQ3V6T2 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC18.69■□□□□ 0.58
CCDC88AQ3V6T2 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC18.69■□□□□ 0.58
CCDC88AQ3V6T2 AQP8-202ENST00000566125 1276 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC88AQ3V6T2 RPL37A-211ENST00000598925 775 ntTSL 5 BASIC18.69■□□□□ 0.58
CCDC88AQ3V6T2 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC18.69■□□□□ 0.58
CCDC88AQ3V6T2 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC88AQ3V6T2 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC88AQ3V6T2 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC88AQ3V6T2 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC88AQ3V6T2 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC18.69■□□□□ 0.58
CCDC88AQ3V6T2 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC88AQ3V6T2 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC88AQ3V6T2 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC88AQ3V6T2 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC88AQ3V6T2 SUPT20HL2-201ENST00000486479 2409 ntBASIC18.69■□□□□ 0.58
CCDC88AQ3V6T2 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC88AQ3V6T2 AL158070.2-201ENST00000623713 1621 ntBASIC18.69■□□□□ 0.58
CCDC88AQ3V6T2 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
CCDC88AQ3V6T2 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC18.69■□□□□ 0.58
CCDC88AQ3V6T2 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC88AQ3V6T2 LSM5-207ENST00000410044 687 ntTSL 3 BASIC18.69■□□□□ 0.58
CCDC88AQ3V6T2 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC18.69■□□□□ 0.58
CCDC88AQ3V6T2 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC18.69■□□□□ 0.58
CCDC88AQ3V6T2 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC18.69■□□□□ 0.58
CCDC88AQ3V6T2 EID1-202ENST00000560490 584 ntTSL 3 BASIC18.69■□□□□ 0.58
CCDC88AQ3V6T2 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC18.69■□□□□ 0.58
CCDC88AQ3V6T2 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC18.69■□□□□ 0.58
CCDC88AQ3V6T2 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC88AQ3V6T2 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC18.69■□□□□ 0.58
CCDC88AQ3V6T2 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC88AQ3V6T2 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC18.68■□□□□ 0.58
CCDC88AQ3V6T2 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC18.68■□□□□ 0.58
CCDC88AQ3V6T2 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
CCDC88AQ3V6T2 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC18.68■□□□□ 0.58
CCDC88AQ3V6T2 AC084364.1-201ENST00000551967 1556 ntBASIC18.68■□□□□ 0.58
CCDC88AQ3V6T2 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
CCDC88AQ3V6T2 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC88AQ3V6T2 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC88AQ3V6T2 ZDHHC4-204ENST00000396709 1485 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
CCDC88AQ3V6T2 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC88AQ3V6T2 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC88AQ3V6T2 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
CCDC88AQ3V6T2 AC114812.1-204ENST00000449669 728 ntBASIC18.68■□□□□ 0.58
CCDC88AQ3V6T2 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC18.68■□□□□ 0.58
CCDC88AQ3V6T2 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC18.68■□□□□ 0.58
CCDC88AQ3V6T2 SYT17-208ENST00000568433 812 ntTSL 3 BASIC18.68■□□□□ 0.58
CCDC88AQ3V6T2 INO80C-210ENST00000590757 595 ntTSL 2 BASIC18.68■□□□□ 0.58
CCDC88AQ3V6T2 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC18.68■□□□□ 0.58
CCDC88AQ3V6T2 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC88AQ3V6T2 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC88AQ3V6T2 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC18.68■□□□□ 0.58
CCDC88AQ3V6T2 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC88AQ3V6T2 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC88AQ3V6T2 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC88AQ3V6T2 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC88AQ3V6T2 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC18.68■□□□□ 0.58
CCDC88AQ3V6T2 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC88AQ3V6T2 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC88AQ3V6T2 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC18.67■□□□□ 0.58
CCDC88AQ3V6T2 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
CCDC88AQ3V6T2 C12orf76-207ENST00000549724 1302 ntTSL 5 BASIC18.67■□□□□ 0.58
CCDC88AQ3V6T2 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC88AQ3V6T2 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC88AQ3V6T2 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC18.67■□□□□ 0.58
CCDC88AQ3V6T2 AMT-224ENST00000635808 1610 ntTSL 5 BASIC18.67■□□□□ 0.58
CCDC88AQ3V6T2 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC88AQ3V6T2 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
CCDC88AQ3V6T2 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC88AQ3V6T2 NR0B2-201ENST00000254227 1156 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC88AQ3V6T2 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC88AQ3V6T2 AC026316.1-201ENST00000398900 414 ntBASIC18.67■□□□□ 0.58
CCDC88AQ3V6T2 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC88AQ3V6T2 RPL17P45-201ENST00000586289 509 ntBASIC18.67■□□□□ 0.58
CCDC88AQ3V6T2 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC88AQ3V6T2 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC88AQ3V6T2 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC88AQ3V6T2 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC88AQ3V6T2 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC88AQ3V6T2 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC88AQ3V6T2 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC18.67■□□□□ 0.58
CCDC88AQ3V6T2 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC88AQ3V6T2 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC18.67■□□□□ 0.58
CCDC88AQ3V6T2 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC88AQ3V6T2 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC18.67■□□□□ 0.58
CCDC88AQ3V6T2 AC025271.4-201ENST00000621477 1726 ntBASIC18.67■□□□□ 0.58
CCDC88AQ3V6T2 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
CCDC88AQ3V6T2 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms