Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RNF4P78317 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
RNF4P78317 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
RNF4P78317 POLL-217ENST00000628479 1953 ntTSL 5 BASIC14.43□□□□□ -0.1
RNF4P78317 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RNF4P78317 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
RNF4P78317 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC14.43□□□□□ -0.1
RNF4P78317 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC14.43□□□□□ -0.1
RNF4P78317 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RNF4P78317 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RNF4P78317 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RNF4P78317 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
RNF4P78317 MFF-204ENST00000353339 2186 ntTSL 5 BASIC14.43□□□□□ -0.1
RNF4P78317 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC14.43□□□□□ -0.1
RNF4P78317 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC14.43□□□□□ -0.1
RNF4P78317 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
RNF4P78317 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC14.43□□□□□ -0.1
RNF4P78317 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC14.43□□□□□ -0.1
RNF4P78317 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC14.43□□□□□ -0.1
RNF4P78317 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RNF4P78317 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
RNF4P78317 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC14.43□□□□□ -0.1
RNF4P78317 AC009090.5-201ENST00000624886 2285 ntBASIC14.43□□□□□ -0.1
RNF4P78317 PAUPAR-201ENST00000630360 2965 ntBASIC14.43□□□□□ -0.1
RNF4P78317 HLA-DQB2-231ENST00000435145 2026 ntBASIC14.42□□□□□ -0.1
RNF4P78317 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
RNF4P78317 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RNF4P78317 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
RNF4P78317 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RNF4P78317 CU639417.3-201ENST00000624240 1404 ntBASIC14.42□□□□□ -0.1
RNF4P78317 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
RNF4P78317 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
RNF4P78317 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
RNF4P78317 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RNF4P78317 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
RNF4P78317 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
RNF4P78317 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RNF4P78317 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC14.42□□□□□ -0.1
RNF4P78317 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC14.42□□□□□ -0.1
RNF4P78317 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC14.42□□□□□ -0.1
RNF4P78317 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RNF4P78317 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RNF4P78317 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC14.42□□□□□ -0.1
RNF4P78317 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC14.42□□□□□ -0.1
RNF4P78317 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC14.42□□□□□ -0.1
RNF4P78317 NME2P1-201ENST00000426182 414 ntBASIC14.42□□□□□ -0.1
RNF4P78317 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC14.42□□□□□ -0.1
RNF4P78317 AC134915.1-201ENST00000426461 574 ntBASIC14.42□□□□□ -0.1
RNF4P78317 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC14.42□□□□□ -0.1
RNF4P78317 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
RNF4P78317 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC14.42□□□□□ -0.1
RNF4P78317 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC14.42□□□□□ -0.1
RNF4P78317 RN7SL752P-201ENST00000463779 287 ntBASIC14.42□□□□□ -0.1
RNF4P78317 AC011495.1-201ENST00000498085 584 ntBASIC14.42□□□□□ -0.1
RNF4P78317 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
RNF4P78317 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC14.42□□□□□ -0.1
RNF4P78317 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC14.42□□□□□ -0.1
RNF4P78317 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC14.42□□□□□ -0.1
RNF4P78317 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC14.42□□□□□ -0.1
RNF4P78317 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC14.42□□□□□ -0.1
RNF4P78317 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC14.42□□□□□ -0.1
RNF4P78317 AC133539.2-201ENST00000604757 467 ntBASIC14.42□□□□□ -0.1
RNF4P78317 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC14.42□□□□□ -0.1
RNF4P78317 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC14.42□□□□□ -0.1
RNF4P78317 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RNF4P78317 INTS4P2-202ENST00000614726 2019 ntBASIC14.42□□□□□ -0.1
RNF4P78317 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
RNF4P78317 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
RNF4P78317 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC14.42□□□□□ -0.1
RNF4P78317 AC084364.1-201ENST00000551967 1556 ntBASIC14.42□□□□□ -0.1
RNF4P78317 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RNF4P78317 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
RNF4P78317 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RNF4P78317 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RNF4P78317 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RNF4P78317 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
RNF4P78317 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
RNF4P78317 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
RNF4P78317 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RNF4P78317 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RNF4P78317 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
RNF4P78317 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC14.41□□□□□ -0.1
RNF4P78317 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
RNF4P78317 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RNF4P78317 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
RNF4P78317 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RNF4P78317 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
RNF4P78317 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RNF4P78317 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
RNF4P78317 COX5BP8-201ENST00000416911 349 ntBASIC14.41□□□□□ -0.1
RNF4P78317 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
RNF4P78317 GSAP-205ENST00000430584 600 ntTSL 5 BASIC14.41□□□□□ -0.1
RNF4P78317 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
RNF4P78317 VDAC1P7-201ENST00000462417 847 ntBASIC14.41□□□□□ -0.1
RNF4P78317 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
RNF4P78317 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
RNF4P78317 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC14.41□□□□□ -0.1
RNF4P78317 HNRNPA1P13-201ENST00000510646 963 ntBASIC14.41□□□□□ -0.1
RNF4P78317 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC14.41□□□□□ -0.1
RNF4P78317 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC14.41□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms