Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
NEK3P51956 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
NEK3P51956 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
NEK3P51956 AC112693.3-201ENST00000624819 1983 ntBASIC16.11■□□□□ 0.17
NEK3P51956 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
NEK3P51956 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
NEK3P51956 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
NEK3P51956 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
NEK3P51956 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
NEK3P51956 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
NEK3P51956 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
NEK3P51956 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
NEK3P51956 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
NEK3P51956 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
NEK3P51956 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
NEK3P51956 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
NEK3P51956 CALY-202ENST00000368555 783 ntTSL 2 BASIC16.11■□□□□ 0.17
NEK3P51956 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
NEK3P51956 AC015922.1-201ENST00000421102 1152 ntBASIC16.11■□□□□ 0.17
NEK3P51956 AC114501.2-201ENST00000439631 535 ntBASIC16.11■□□□□ 0.17
NEK3P51956 CRB3P1-201ENST00000449338 276 ntBASIC16.11■□□□□ 0.17
NEK3P51956 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC16.11■□□□□ 0.17
NEK3P51956 PTK7-212ENST00000476760 902 ntTSL 2 BASIC16.11■□□□□ 0.17
NEK3P51956 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC16.11■□□□□ 0.17
NEK3P51956 EHF-205ENST00000527935 557 ntTSL 2 BASIC16.11■□□□□ 0.17
NEK3P51956 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC16.11■□□□□ 0.17
NEK3P51956 RAB35-202ENST00000534951 939 ntTSL 2 BASIC16.11■□□□□ 0.17
NEK3P51956 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC16.11■□□□□ 0.17
NEK3P51956 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
NEK3P51956 AC104794.3-201ENST00000566840 1248 ntBASIC16.11■□□□□ 0.17
NEK3P51956 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC16.11■□□□□ 0.17
NEK3P51956 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
NEK3P51956 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
NEK3P51956 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
NEK3P51956 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC16.11■□□□□ 0.17
NEK3P51956 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
NEK3P51956 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC16.1■□□□□ 0.17
NEK3P51956 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC16.1■□□□□ 0.17
NEK3P51956 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC16.1■□□□□ 0.17
NEK3P51956 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
NEK3P51956 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC16.1■□□□□ 0.17
NEK3P51956 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
NEK3P51956 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
NEK3P51956 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
NEK3P51956 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
NEK3P51956 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC16.1■□□□□ 0.17
NEK3P51956 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC16.1■□□□□ 0.17
NEK3P51956 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
NEK3P51956 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC16.1■□□□□ 0.17
NEK3P51956 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
NEK3P51956 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC16.1■□□□□ 0.17
NEK3P51956 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
NEK3P51956 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
NEK3P51956 COQ6-210ENST00000554920 649 ntTSL 3 BASIC16.1■□□□□ 0.17
NEK3P51956 SPIB-207ENST00000597855 564 ntTSL 4 BASIC16.1■□□□□ 0.17
NEK3P51956 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
NEK3P51956 TEX48-202ENST00000612244 662 ntTSL 3 BASIC16.1■□□□□ 0.17
NEK3P51956 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC16.1■□□□□ 0.17
NEK3P51956 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
NEK3P51956 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
NEK3P51956 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC16.1■□□□□ 0.17
NEK3P51956 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
NEK3P51956 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC16.1■□□□□ 0.17
NEK3P51956 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
NEK3P51956 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
NEK3P51956 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
NEK3P51956 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC16.1■□□□□ 0.17
NEK3P51956 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
NEK3P51956 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC16.1■□□□□ 0.17
NEK3P51956 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
NEK3P51956 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC16.09■□□□□ 0.17
NEK3P51956 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
NEK3P51956 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC16.09■□□□□ 0.17
NEK3P51956 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
NEK3P51956 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
NEK3P51956 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
NEK3P51956 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
NEK3P51956 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
NEK3P51956 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
NEK3P51956 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
NEK3P51956 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
NEK3P51956 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
NEK3P51956 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
NEK3P51956 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
NEK3P51956 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
NEK3P51956 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
NEK3P51956 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
NEK3P51956 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC16.09■□□□□ 0.17
NEK3P51956 ELP6-209ENST00000446787 894 ntTSL 3 BASIC16.09■□□□□ 0.17
NEK3P51956 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC16.09■□□□□ 0.17
NEK3P51956 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
NEK3P51956 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC16.09■□□□□ 0.17
NEK3P51956 SUOX-214ENST00000551841 906 ntTSL 3 BASIC16.09■□□□□ 0.17
NEK3P51956 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC16.09■□□□□ 0.17
NEK3P51956 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC16.09■□□□□ 0.17
NEK3P51956 AC027307.3-201ENST00000594262 1100 ntBASIC16.09■□□□□ 0.17
NEK3P51956 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC16.09■□□□□ 0.17
NEK3P51956 5S_rRNA.22-201ENST00000614916 106 ntBASIC16.09■□□□□ 0.17
NEK3P51956 AF228730.6-201ENST00000641497 218 ntBASIC16.09■□□□□ 0.17
NEK3P51956 AC084121.3-201ENST00000641716 218 ntBASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms