Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC16.52■□□□□ 0.23
LIG3P49916 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC16.52■□□□□ 0.23
LIG3P49916 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC16.52■□□□□ 0.23
LIG3P49916 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
LIG3P49916 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC16.52■□□□□ 0.23
LIG3P49916 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
LIG3P49916 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC16.51■□□□□ 0.23
LIG3P49916 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LIG3P49916 STX18-AS1-207ENST00000610009 2406 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
LIG3P49916 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
LIG3P49916 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
LIG3P49916 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
LIG3P49916 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
LIG3P49916 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LIG3P49916 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LIG3P49916 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
LIG3P49916 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
LIG3P49916 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC16.51■□□□□ 0.23
LIG3P49916 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
LIG3P49916 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC16.51■□□□□ 0.23
LIG3P49916 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LIG3P49916 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
LIG3P49916 GPS2P2-201ENST00000430745 888 ntBASIC16.51■□□□□ 0.23
LIG3P49916 RBPMS2P1-201ENST00000437762 623 ntBASIC16.51■□□□□ 0.23
LIG3P49916 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC16.51■□□□□ 0.23
LIG3P49916 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC16.51■□□□□ 0.23
LIG3P49916 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC16.51■□□□□ 0.23
LIG3P49916 AC105233.2-201ENST00000523697 349 ntBASIC16.51■□□□□ 0.23
LIG3P49916 AF228730.5-201ENST00000530288 346 ntBASIC16.51■□□□□ 0.23
LIG3P49916 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC16.51■□□□□ 0.23
LIG3P49916 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
LIG3P49916 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC16.51■□□□□ 0.23
LIG3P49916 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC16.51■□□□□ 0.23
LIG3P49916 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC16.51■□□□□ 0.23
LIG3P49916 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
LIG3P49916 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC16.51■□□□□ 0.23
LIG3P49916 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
LIG3P49916 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
LIG3P49916 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
LIG3P49916 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
LIG3P49916 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LIG3P49916 GPAA1P2-202ENST00000606848 1787 ntBASIC16.51■□□□□ 0.23
LIG3P49916 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC16.51■□□□□ 0.23
LIG3P49916 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LIG3P49916 THTPA-201ENST00000288014 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LIG3P49916 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC16.51■□□□□ 0.23
LIG3P49916 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC16.51■□□□□ 0.23
LIG3P49916 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LIG3P49916 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC16.5■□□□□ 0.23
LIG3P49916 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LIG3P49916 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
LIG3P49916 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LIG3P49916 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
LIG3P49916 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
LIG3P49916 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
LIG3P49916 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LIG3P49916 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
LIG3P49916 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
LIG3P49916 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC16.5■□□□□ 0.23
LIG3P49916 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LIG3P49916 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC16.5■□□□□ 0.23
LIG3P49916 HNRNPFP1-201ENST00000391730 1133 ntBASIC16.5■□□□□ 0.23
LIG3P49916 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC16.5■□□□□ 0.23
LIG3P49916 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC16.5■□□□□ 0.23
LIG3P49916 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC16.5■□□□□ 0.23
LIG3P49916 LSM12-202ENST00000585388 942 ntTSL 3 BASIC16.5■□□□□ 0.23
LIG3P49916 AC106028.4-201ENST00000614509 607 ntBASIC16.5■□□□□ 0.23
LIG3P49916 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
LIG3P49916 AC073439.1-201ENST00000624121 1774 ntBASIC16.5■□□□□ 0.23
LIG3P49916 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC16.5■□□□□ 0.23
LIG3P49916 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LIG3P49916 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
LIG3P49916 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
LIG3P49916 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LIG3P49916 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LIG3P49916 MYO15B-237ENST00000642007 4893 ntBASIC16.5■□□□□ 0.23
LIG3P49916 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
LIG3P49916 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LIG3P49916 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
LIG3P49916 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
LIG3P49916 CALHM1-201ENST00000329905 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LIG3P49916 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC16.49■□□□□ 0.23
LIG3P49916 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LIG3P49916 ATXN7L1-207ENST00000477775 2426 ntTSL 2 BASIC16.49■□□□□ 0.23
LIG3P49916 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC16.49■□□□□ 0.23
LIG3P49916 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LIG3P49916 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
LIG3P49916 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LIG3P49916 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
LIG3P49916 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LIG3P49916 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LIG3P49916 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
LIG3P49916 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
LIG3P49916 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
LIG3P49916 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
LIG3P49916 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LIG3P49916 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
LIG3P49916 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
LIG3P49916 RPL30-202ENST00000396070 440 ntTSL 2 BASIC16.49■□□□□ 0.23
LIG3P49916 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms