Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC15.34■□□□□ 0.05
CXCL12P48061 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC15.34■□□□□ 0.05
CXCL12P48061 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CXCL12P48061 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CXCL12P48061 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
CXCL12P48061 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
CXCL12P48061 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
CXCL12P48061 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
CXCL12P48061 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.05
CXCL12P48061 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
CXCL12P48061 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
CXCL12P48061 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC15.33■□□□□ 0.05
CXCL12P48061 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.05
CXCL12P48061 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
CXCL12P48061 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
CXCL12P48061 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
CXCL12P48061 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CXCL12P48061 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CXCL12P48061 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC15.33■□□□□ 0.04
CXCL12P48061 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CXCL12P48061 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
CXCL12P48061 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CXCL12P48061 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CXCL12P48061 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CXCL12P48061 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CXCL12P48061 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CXCL12P48061 ACTG1P2-201ENST00000415776 1125 ntBASIC15.33■□□□□ 0.04
CXCL12P48061 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC15.33■□□□□ 0.04
CXCL12P48061 ACTG1P11-201ENST00000425411 1125 ntBASIC15.33■□□□□ 0.04
CXCL12P48061 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC15.33■□□□□ 0.04
CXCL12P48061 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC15.33■□□□□ 0.04
CXCL12P48061 TUBB8P8-201ENST00000458717 1058 ntBASIC15.33■□□□□ 0.04
CXCL12P48061 AP003171.2-201ENST00000528208 925 ntBASIC15.33■□□□□ 0.04
CXCL12P48061 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC15.33■□□□□ 0.04
CXCL12P48061 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC15.33■□□□□ 0.04
CXCL12P48061 BNIP3P13-201ENST00000599968 566 ntBASIC15.33■□□□□ 0.04
CXCL12P48061 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC15.33■□□□□ 0.04
CXCL12P48061 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CXCL12P48061 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CXCL12P48061 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
CXCL12P48061 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CXCL12P48061 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CXCL12P48061 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
CXCL12P48061 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CXCL12P48061 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
CXCL12P48061 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CXCL12P48061 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CXCL12P48061 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CXCL12P48061 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC15.32■□□□□ 0.04
CXCL12P48061 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CXCL12P48061 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CXCL12P48061 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CXCL12P48061 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CXCL12P48061 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
CXCL12P48061 AC018695.7-201ENST00000624587 2492 ntBASIC15.32■□□□□ 0.04
CXCL12P48061 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CXCL12P48061 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CXCL12P48061 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
CXCL12P48061 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CXCL12P48061 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC15.32■□□□□ 0.04
CXCL12P48061 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
CXCL12P48061 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC15.32■□□□□ 0.04
CXCL12P48061 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC15.32■□□□□ 0.04
CXCL12P48061 AC006335.1-201ENST00000445200 547 ntBASIC15.32■□□□□ 0.04
CXCL12P48061 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC15.32■□□□□ 0.04
CXCL12P48061 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC15.32■□□□□ 0.04
CXCL12P48061 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC15.32■□□□□ 0.04
CXCL12P48061 CENPX-208ENST00000584347 799 ntTSL 2 BASIC15.32■□□□□ 0.04
CXCL12P48061 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC15.32■□□□□ 0.04
CXCL12P48061 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CXCL12P48061 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CXCL12P48061 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
CXCL12P48061 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CXCL12P48061 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CXCL12P48061 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CXCL12P48061 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CXCL12P48061 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CXCL12P48061 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CXCL12P48061 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CXCL12P48061 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC15.32■□□□□ 0.04
CXCL12P48061 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CXCL12P48061 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
CXCL12P48061 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
CXCL12P48061 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CXCL12P48061 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC15.32■□□□□ 0.04
CXCL12P48061 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CXCL12P48061 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
CXCL12P48061 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC15.31■□□□□ 0.04
CXCL12P48061 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CXCL12P48061 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC15.31■□□□□ 0.04
CXCL12P48061 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CXCL12P48061 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CXCL12P48061 EML3-212ENST00000494176 2901 ntTSL 2 BASIC15.31■□□□□ 0.04
CXCL12P48061 EML3-216ENST00000529309 2909 ntTSL 2 BASIC15.31■□□□□ 0.04
CXCL12P48061 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CXCL12P48061 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CXCL12P48061 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
CXCL12P48061 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC15.31■□□□□ 0.04
CXCL12P48061 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CXCL12P48061 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC15.31■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 57.1 ms