Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
RFC3P40938 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC14.32□□□□□ -0.12
RFC3P40938 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC14.32□□□□□ -0.12
RFC3P40938 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RFC3P40938 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
RFC3P40938 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RFC3P40938 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC14.32□□□□□ -0.12
RFC3P40938 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
RFC3P40938 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
RFC3P40938 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
RFC3P40938 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RFC3P40938 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
RFC3P40938 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
RFC3P40938 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RFC3P40938 AC079776.1-201ENST00000401540 1152 ntBASIC14.32□□□□□ -0.12
RFC3P40938 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
RFC3P40938 AC136604.1-201ENST00000418535 575 ntBASIC14.32□□□□□ -0.12
RFC3P40938 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
RFC3P40938 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC14.32□□□□□ -0.12
RFC3P40938 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC14.32□□□□□ -0.12
RFC3P40938 ACA64.2-201ENST00000459014 129 ntBASIC14.32□□□□□ -0.12
RFC3P40938 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC14.32□□□□□ -0.12
RFC3P40938 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC14.32□□□□□ -0.12
RFC3P40938 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC14.32□□□□□ -0.12
RFC3P40938 AL359711.2-201ENST00000563105 872 ntBASIC14.32□□□□□ -0.12
RFC3P40938 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC14.32□□□□□ -0.12
RFC3P40938 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RFC3P40938 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC14.32□□□□□ -0.12
RFC3P40938 AC008735.3-201ENST00000596646 500 ntBASIC14.32□□□□□ -0.12
RFC3P40938 AC097359.3-201ENST00000603982 1210 ntBASIC14.32□□□□□ -0.12
RFC3P40938 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC14.32□□□□□ -0.12
RFC3P40938 AC017083.2-201ENST00000608069 979 ntBASIC14.32□□□□□ -0.12
RFC3P40938 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC14.32□□□□□ -0.12
RFC3P40938 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RFC3P40938 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RFC3P40938 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
RFC3P40938 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
RFC3P40938 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC14.32□□□□□ -0.12
RFC3P40938 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
RFC3P40938 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
RFC3P40938 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
RFC3P40938 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC14.32□□□□□ -0.12
RFC3P40938 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RFC3P40938 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
RFC3P40938 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
RFC3P40938 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC14.32□□□□□ -0.12
RFC3P40938 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC14.32□□□□□ -0.12
RFC3P40938 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RFC3P40938 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
RFC3P40938 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC14.32□□□□□ -0.12
RFC3P40938 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC14.32□□□□□ -0.12
RFC3P40938 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
RFC3P40938 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC14.32□□□□□ -0.12
RFC3P40938 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC14.32□□□□□ -0.12
RFC3P40938 PRAL-201ENST00000624952 3286 ntBASIC14.32□□□□□ -0.12
RFC3P40938 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
RFC3P40938 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC14.31□□□□□ -0.12
RFC3P40938 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
RFC3P40938 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
RFC3P40938 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC14.31□□□□□ -0.12
RFC3P40938 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RFC3P40938 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
RFC3P40938 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC14.31□□□□□ -0.12
RFC3P40938 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC14.31□□□□□ -0.12
RFC3P40938 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
RFC3P40938 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
RFC3P40938 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RFC3P40938 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RFC3P40938 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC14.31□□□□□ -0.12
RFC3P40938 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RFC3P40938 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RFC3P40938 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RFC3P40938 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
RFC3P40938 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
RFC3P40938 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
RFC3P40938 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC14.31□□□□□ -0.12
RFC3P40938 AC007389.4-201ENST00000454674 793 ntBASIC14.31□□□□□ -0.12
RFC3P40938 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RFC3P40938 FUZ-207ENST00000526575 482 ntTSL 4 BASIC14.31□□□□□ -0.12
RFC3P40938 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RFC3P40938 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
RFC3P40938 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC14.31□□□□□ -0.12
RFC3P40938 PIGL-212ENST00000581006 554 ntTSL 4 BASIC14.31□□□□□ -0.12
RFC3P40938 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
RFC3P40938 CU634019.7-201ENST00000624153 1185 ntBASIC14.31□□□□□ -0.12
RFC3P40938 FP236241.2-201ENST00000624906 1185 ntBASIC14.31□□□□□ -0.12
RFC3P40938 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RFC3P40938 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC14.31□□□□□ -0.12
RFC3P40938 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
RFC3P40938 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RFC3P40938 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
RFC3P40938 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
RFC3P40938 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RFC3P40938 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC14.31□□□□□ -0.12
RFC3P40938 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
RFC3P40938 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC14.31□□□□□ -0.12
RFC3P40938 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC14.31□□□□□ -0.12
RFC3P40938 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
RFC3P40938 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
RFC3P40938 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC14.31□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms