Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC13.6□□□□□ -0.23
COL8A1P27658 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC13.6□□□□□ -0.23
COL8A1P27658 AL645728.1-201ENST00000366221 2101 ntBASIC13.6□□□□□ -0.23
COL8A1P27658 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL8A1P27658 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC13.6□□□□□ -0.23
COL8A1P27658 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
COL8A1P27658 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL8A1P27658 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC13.6□□□□□ -0.23
COL8A1P27658 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC13.6□□□□□ -0.23
COL8A1P27658 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL8A1P27658 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC13.6□□□□□ -0.23
COL8A1P27658 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC13.6□□□□□ -0.23
COL8A1P27658 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC13.6□□□□□ -0.23
COL8A1P27658 MSRA-203ENST00000441698 788 ntTSL 2 BASIC13.6□□□□□ -0.23
COL8A1P27658 AL596276.2-201ENST00000447525 331 ntBASIC13.6□□□□□ -0.23
COL8A1P27658 LY6E-208ENST00000520531 490 ntTSL 2 BASIC13.6□□□□□ -0.23
COL8A1P27658 PTK2-225ENST00000520892 571 ntTSL 4 BASIC13.6□□□□□ -0.23
COL8A1P27658 CFL1-206ENST00000527344 962 ntTSL 2 BASIC13.6□□□□□ -0.23
COL8A1P27658 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC13.6□□□□□ -0.23
COL8A1P27658 SRSF3-208ENST00000620941 869 ntAPPRIS P1 TSL 3 BASIC13.6□□□□□ -0.23
COL8A1P27658 ETV2-208ENST00000621247 941 ntTSL 5 BASIC13.6□□□□□ -0.23
COL8A1P27658 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC13.6□□□□□ -0.23
COL8A1P27658 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC13.6□□□□□ -0.23
COL8A1P27658 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
COL8A1P27658 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL8A1P27658 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
COL8A1P27658 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
COL8A1P27658 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL8A1P27658 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
COL8A1P27658 TUBBP5-203ENST00000508529 1334 ntBASIC13.6□□□□□ -0.23
COL8A1P27658 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL8A1P27658 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL8A1P27658 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL8A1P27658 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL8A1P27658 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL8A1P27658 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL8A1P27658 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC13.59□□□□□ -0.23
COL8A1P27658 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
COL8A1P27658 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL8A1P27658 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL8A1P27658 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
COL8A1P27658 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL8A1P27658 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
COL8A1P27658 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC13.59□□□□□ -0.23
COL8A1P27658 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL8A1P27658 AL023775.1-201ENST00000454907 1746 ntBASIC13.59□□□□□ -0.23
COL8A1P27658 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL8A1P27658 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL8A1P27658 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
COL8A1P27658 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL8A1P27658 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL8A1P27658 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC13.59□□□□□ -0.23
COL8A1P27658 DRD5P1-201ENST00000456605 1438 ntBASIC13.59□□□□□ -0.23
COL8A1P27658 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL8A1P27658 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC13.59□□□□□ -0.23
COL8A1P27658 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL8A1P27658 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL8A1P27658 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC13.59□□□□□ -0.23
COL8A1P27658 FMC1-201ENST00000297534 1210 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL8A1P27658 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
COL8A1P27658 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
COL8A1P27658 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL8A1P27658 TEX30-203ENST00000376022 828 ntTSL 2 BASIC13.59□□□□□ -0.23
COL8A1P27658 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
COL8A1P27658 ORMDL1-204ENST00000409519 1223 ntTSL 3 BASIC13.59□□□□□ -0.23
COL8A1P27658 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
COL8A1P27658 AC012618.1-201ENST00000461223 412 ntBASIC13.59□□□□□ -0.23
COL8A1P27658 SERPINA13P-202ENST00000478994 924 ntBASIC13.59□□□□□ -0.23
COL8A1P27658 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC13.59□□□□□ -0.23
COL8A1P27658 KRT18P25-201ENST00000508931 1278 ntBASIC13.59□□□□□ -0.23
COL8A1P27658 RNF41-210ENST00000552244 716 ntTSL 3 BASIC13.59□□□□□ -0.23
COL8A1P27658 AC009041.1-201ENST00000565401 544 ntTSL 4 BASIC13.59□□□□□ -0.23
COL8A1P27658 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC13.59□□□□□ -0.23
COL8A1P27658 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
COL8A1P27658 AC107373.2-201ENST00000607735 490 ntBASIC13.59□□□□□ -0.23
COL8A1P27658 UBE2Q2P6-202ENST00000617217 443 ntTSL 5 BASIC13.59□□□□□ -0.23
COL8A1P27658 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
COL8A1P27658 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
COL8A1P27658 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL8A1P27658 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL8A1P27658 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL8A1P27658 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
COL8A1P27658 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL8A1P27658 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC13.59□□□□□ -0.23
COL8A1P27658 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
COL8A1P27658 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC13.59□□□□□ -0.23
COL8A1P27658 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
COL8A1P27658 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
COL8A1P27658 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL8A1P27658 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC13.59□□□□□ -0.23
COL8A1P27658 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
COL8A1P27658 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
COL8A1P27658 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC13.59□□□□□ -0.23
COL8A1P27658 RHBDF1P1-201ENST00000427504 1941 ntBASIC13.58□□□□□ -0.23
COL8A1P27658 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
COL8A1P27658 AC126755.1-201ENST00000525846 6405 ntBASIC13.58□□□□□ -0.23
COL8A1P27658 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
COL8A1P27658 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
COL8A1P27658 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
COL8A1P27658 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms