Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC14.86□□□□□ -0.03
SDC1P18827 WASH3P-207ENST00000560956 1394 ntBASIC14.86□□□□□ -0.03
SDC1P18827 FO538757.1-201ENST00000623083 1397 ntBASIC14.86□□□□□ -0.03
SDC1P18827 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
SDC1P18827 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SDC1P18827 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SDC1P18827 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SDC1P18827 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SDC1P18827 DEK-201ENST00000244776 1441 ntTSL 2 BASIC14.86□□□□□ -0.03
SDC1P18827 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SDC1P18827 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SDC1P18827 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SDC1P18827 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SDC1P18827 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SDC1P18827 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
SDC1P18827 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
SDC1P18827 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
SDC1P18827 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC14.86□□□□□ -0.03
SDC1P18827 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC14.86□□□□□ -0.03
SDC1P18827 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC14.86□□□□□ -0.03
SDC1P18827 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SDC1P18827 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC14.86□□□□□ -0.03
SDC1P18827 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SDC1P18827 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
SDC1P18827 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC14.86□□□□□ -0.03
SDC1P18827 AC069262.1-201ENST00000539058 672 ntBASIC14.86□□□□□ -0.03
SDC1P18827 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC14.86□□□□□ -0.03
SDC1P18827 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC14.86□□□□□ -0.03
SDC1P18827 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SDC1P18827 GPER1-207ENST00000619052 571 ntTSL 2 BASIC14.86□□□□□ -0.03
SDC1P18827 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC14.86□□□□□ -0.03
SDC1P18827 AC134684.3-201ENST00000641758 218 ntBASIC14.86□□□□□ -0.03
SDC1P18827 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC14.86□□□□□ -0.03
SDC1P18827 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
SDC1P18827 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
SDC1P18827 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC14.86□□□□□ -0.03
SDC1P18827 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SDC1P18827 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
SDC1P18827 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SDC1P18827 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC14.86□□□□□ -0.03
SDC1P18827 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SDC1P18827 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
SDC1P18827 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
SDC1P18827 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SDC1P18827 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
SDC1P18827 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
SDC1P18827 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC14.85□□□□□ -0.03
SDC1P18827 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
SDC1P18827 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SDC1P18827 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC14.85□□□□□ -0.03
SDC1P18827 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
SDC1P18827 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SDC1P18827 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SDC1P18827 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
SDC1P18827 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SDC1P18827 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SDC1P18827 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
SDC1P18827 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SDC1P18827 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SDC1P18827 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SDC1P18827 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC14.85□□□□□ -0.03
SDC1P18827 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC14.85□□□□□ -0.03
SDC1P18827 GHSR-202ENST00000427970 912 ntBASIC14.85□□□□□ -0.03
SDC1P18827 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
SDC1P18827 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SDC1P18827 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC14.85□□□□□ -0.03
SDC1P18827 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC14.85□□□□□ -0.03
SDC1P18827 COQ4-205ENST00000609948 956 ntTSL 2 BASIC14.85□□□□□ -0.03
SDC1P18827 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SDC1P18827 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
SDC1P18827 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
SDC1P18827 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC14.85□□□□□ -0.03
SDC1P18827 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC14.85□□□□□ -0.03
SDC1P18827 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SDC1P18827 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
SDC1P18827 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SDC1P18827 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SDC1P18827 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
SDC1P18827 AL136379.1-201ENST00000623471 2642 ntBASIC14.85□□□□□ -0.03
SDC1P18827 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC14.85□□□□□ -0.03
SDC1P18827 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SDC1P18827 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SDC1P18827 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SDC1P18827 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC14.85□□□□□ -0.03
SDC1P18827 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SDC1P18827 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SDC1P18827 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SDC1P18827 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC14.84□□□□□ -0.03
SDC1P18827 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SDC1P18827 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC14.84□□□□□ -0.03
SDC1P18827 GRAMD4P3-201ENST00000621665 1669 ntBASIC14.84□□□□□ -0.03
SDC1P18827 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
SDC1P18827 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
SDC1P18827 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC14.84□□□□□ -0.03
SDC1P18827 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SDC1P18827 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SDC1P18827 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC14.84□□□□□ -0.03
SDC1P18827 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
SDC1P18827 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SDC1P18827 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC14.84□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms