Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AC026316.1-201ENST00000398900 414 ntBASIC17.01■□□□□ 0.31
COL6A1P12109 RN7SL818P-201ENST00000485099 259 ntBASIC17.01■□□□□ 0.31
COL6A1P12109 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC17.01■□□□□ 0.31
COL6A1P12109 AC106820.3-201ENST00000561653 397 ntBASIC17.01■□□□□ 0.31
COL6A1P12109 AC103988.2-201ENST00000561804 725 ntBASIC17.01■□□□□ 0.31
COL6A1P12109 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC17.01■□□□□ 0.31
COL6A1P12109 AC020922.3-201ENST00000595064 547 ntBASIC17.01■□□□□ 0.31
COL6A1P12109 RN7SL725P-201ENST00000606439 259 ntBASIC17.01■□□□□ 0.31
COL6A1P12109 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL6A1P12109 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC17.01■□□□□ 0.31
COL6A1P12109 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL6A1P12109 KRT8P14-201ENST00000414254 1442 ntBASIC17.01■□□□□ 0.31
COL6A1P12109 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC17.01■□□□□ 0.31
COL6A1P12109 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC17.01■□□□□ 0.31
COL6A1P12109 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
COL6A1P12109 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
COL6A1P12109 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL6A1P12109 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL6A1P12109 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC17.01■□□□□ 0.31
COL6A1P12109 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
COL6A1P12109 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC17.01■□□□□ 0.31
COL6A1P12109 FLJ38576-201ENST00000623820 2459 ntBASIC17.01■□□□□ 0.31
COL6A1P12109 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC17■□□□□ 0.31
COL6A1P12109 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
COL6A1P12109 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL6A1P12109 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC17■□□□□ 0.31
COL6A1P12109 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC17■□□□□ 0.31
COL6A1P12109 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC17■□□□□ 0.31
COL6A1P12109 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL6A1P12109 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL6A1P12109 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
COL6A1P12109 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
COL6A1P12109 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL6A1P12109 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC17■□□□□ 0.31
COL6A1P12109 AL645937.2-201ENST00000396808 931 ntBASIC17■□□□□ 0.31
COL6A1P12109 LSM5-207ENST00000410044 687 ntTSL 3 BASIC17■□□□□ 0.31
COL6A1P12109 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC17■□□□□ 0.31
COL6A1P12109 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
COL6A1P12109 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC17■□□□□ 0.31
COL6A1P12109 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC17■□□□□ 0.31
COL6A1P12109 EIF3FP3-201ENST00000434851 1086 ntBASIC17■□□□□ 0.31
COL6A1P12109 RNMTL1P1-201ENST00000454103 560 ntBASIC17■□□□□ 0.31
COL6A1P12109 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC17■□□□□ 0.31
COL6A1P12109 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC17■□□□□ 0.31
COL6A1P12109 EIF3K-202ENST00000538434 966 ntTSL 2 BASIC17■□□□□ 0.31
COL6A1P12109 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC17■□□□□ 0.31
COL6A1P12109 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC17■□□□□ 0.31
COL6A1P12109 WDR7-208ENST00000589935 544 ntTSL 4 BASIC17■□□□□ 0.31
COL6A1P12109 AC025181.2-201ENST00000606994 802 ntBASIC17■□□□□ 0.31
COL6A1P12109 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC17■□□□□ 0.31
COL6A1P12109 AC103691.2-201ENST00000618824 433 ntBASIC17■□□□□ 0.31
COL6A1P12109 COX6A1P2-201ENST00000620597 330 ntBASIC17■□□□□ 0.31
COL6A1P12109 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC17■□□□□ 0.31
COL6A1P12109 AC006453.1-201ENST00000636037 1257 ntBASIC17■□□□□ 0.31
COL6A1P12109 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC17■□□□□ 0.31
COL6A1P12109 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC17■□□□□ 0.31
COL6A1P12109 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL6A1P12109 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL6A1P12109 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
COL6A1P12109 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC17■□□□□ 0.31
COL6A1P12109 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
COL6A1P12109 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL6A1P12109 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC17■□□□□ 0.31
COL6A1P12109 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC17■□□□□ 0.31
COL6A1P12109 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC17■□□□□ 0.31
COL6A1P12109 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC17■□□□□ 0.31
COL6A1P12109 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL6A1P12109 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC17■□□□□ 0.31
COL6A1P12109 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC17■□□□□ 0.31
COL6A1P12109 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC16.99■□□□□ 0.31
COL6A1P12109 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL6A1P12109 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL6A1P12109 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC16.99■□□□□ 0.31
COL6A1P12109 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC16.99■□□□□ 0.31
COL6A1P12109 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
COL6A1P12109 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
COL6A1P12109 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC16.99■□□□□ 0.31
COL6A1P12109 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
COL6A1P12109 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC16.99■□□□□ 0.31
COL6A1P12109 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL6A1P12109 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC16.99■□□□□ 0.31
COL6A1P12109 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL6A1P12109 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC16.99■□□□□ 0.31
COL6A1P12109 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL6A1P12109 AL136309.1-201ENST00000403917 691 ntBASIC16.99■□□□□ 0.31
COL6A1P12109 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC16.99■□□□□ 0.31
COL6A1P12109 AC243961.1-201ENST00000432559 384 ntTSL 5 BASIC16.99■□□□□ 0.31
COL6A1P12109 RPL13AP19-201ENST00000434320 584 ntBASIC16.99■□□□□ 0.31
COL6A1P12109 AC245056.1-201ENST00000437631 384 ntTSL 5 BASIC16.99■□□□□ 0.31
COL6A1P12109 AC104073.2-201ENST00000453737 312 ntBASIC16.99■□□□□ 0.31
COL6A1P12109 RN7SL181P-201ENST00000462921 277 ntBASIC16.99■□□□□ 0.31
COL6A1P12109 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC16.99■□□□□ 0.31
COL6A1P12109 CFL1-206ENST00000527344 962 ntTSL 2 BASIC16.99■□□□□ 0.31
COL6A1P12109 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
COL6A1P12109 RN7SL163P-201ENST00000583100 276 ntBASIC16.99■□□□□ 0.31
COL6A1P12109 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC16.99■□□□□ 0.31
COL6A1P12109 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC16.99■□□□□ 0.31
COL6A1P12109 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
COL6A1P12109 MFF-204ENST00000353339 2186 ntTSL 5 BASIC16.99■□□□□ 0.31
COL6A1P12109 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms