Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RTN3O95197 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
RTN3O95197 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
RTN3O95197 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RTN3O95197 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
RTN3O95197 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC16.46■□□□□ 0.23
RTN3O95197 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RTN3O95197 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC16.46■□□□□ 0.23
RTN3O95197 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
RTN3O95197 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC16.46■□□□□ 0.23
RTN3O95197 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RTN3O95197 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
RTN3O95197 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
RTN3O95197 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
RTN3O95197 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC16.46■□□□□ 0.23
RTN3O95197 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
RTN3O95197 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC16.46■□□□□ 0.23
RTN3O95197 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC16.46■□□□□ 0.23
RTN3O95197 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
RTN3O95197 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
RTN3O95197 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
RTN3O95197 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC16.46■□□□□ 0.23
RTN3O95197 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
RTN3O95197 AL033527.5-201ENST00000641382 801 ntBASIC16.46■□□□□ 0.23
RTN3O95197 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RTN3O95197 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
RTN3O95197 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
RTN3O95197 PKD1P5-201ENST00000532415 10291 ntBASIC16.46■□□□□ 0.23
RTN3O95197 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
RTN3O95197 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
RTN3O95197 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
RTN3O95197 R3HDM2P2-201ENST00000401880 2116 ntBASIC16.46■□□□□ 0.23
RTN3O95197 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
RTN3O95197 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
RTN3O95197 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RTN3O95197 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
RTN3O95197 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC16.46■□□□□ 0.22
RTN3O95197 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
RTN3O95197 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC16.46■□□□□ 0.22
RTN3O95197 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC16.45■□□□□ 0.22
RTN3O95197 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
RTN3O95197 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RTN3O95197 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC16.45■□□□□ 0.22
RTN3O95197 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC16.45■□□□□ 0.22
RTN3O95197 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RTN3O95197 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RTN3O95197 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
RTN3O95197 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
RTN3O95197 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
RTN3O95197 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC16.45■□□□□ 0.22
RTN3O95197 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC16.45■□□□□ 0.22
RTN3O95197 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
RTN3O95197 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC16.45■□□□□ 0.22
RTN3O95197 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RTN3O95197 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RTN3O95197 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RTN3O95197 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC16.45■□□□□ 0.22
RTN3O95197 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
RTN3O95197 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RTN3O95197 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
RTN3O95197 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC16.45■□□□□ 0.22
RTN3O95197 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC16.45■□□□□ 0.22
RTN3O95197 GIMAP3P-201ENST00000495150 836 ntBASIC16.45■□□□□ 0.22
RTN3O95197 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC16.45■□□□□ 0.22
RTN3O95197 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC16.45■□□□□ 0.22
RTN3O95197 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RTN3O95197 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC16.45■□□□□ 0.22
RTN3O95197 AC015910.1-201ENST00000579400 975 ntBASIC16.45■□□□□ 0.22
RTN3O95197 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC16.45■□□□□ 0.22
RTN3O95197 AC133539.2-201ENST00000604757 467 ntBASIC16.45■□□□□ 0.22
RTN3O95197 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC16.45■□□□□ 0.22
RTN3O95197 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RTN3O95197 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
RTN3O95197 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC16.45■□□□□ 0.22
RTN3O95197 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RTN3O95197 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
RTN3O95197 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
RTN3O95197 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC16.45■□□□□ 0.22
RTN3O95197 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC16.45■□□□□ 0.22
RTN3O95197 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RTN3O95197 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RTN3O95197 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC16.45■□□□□ 0.22
RTN3O95197 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
RTN3O95197 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC16.45■□□□□ 0.22
RTN3O95197 AMT-232ENST00000636199 1546 ntTSL 5 BASIC16.45■□□□□ 0.22
RTN3O95197 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
RTN3O95197 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
RTN3O95197 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
RTN3O95197 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
RTN3O95197 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
RTN3O95197 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
RTN3O95197 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
RTN3O95197 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
RTN3O95197 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC16.44■□□□□ 0.22
RTN3O95197 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
RTN3O95197 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
RTN3O95197 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
RTN3O95197 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC16.44■□□□□ 0.22
RTN3O95197 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
RTN3O95197 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC16.44■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 67.7 ms