Protein–RNA interactions for Protein: O60716

CTNND1, Catenin delta-1, humanhuman

Known RBP Predictions only

Length 968 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTNND1O60716 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CTNND1O60716 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
CTNND1O60716 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC18.1■□□□□ 0.49
CTNND1O60716 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CTNND1O60716 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CTNND1O60716 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
CTNND1O60716 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CTNND1O60716 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CTNND1O60716 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC18.1■□□□□ 0.49
CTNND1O60716 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
CTNND1O60716 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
CTNND1O60716 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC18.1■□□□□ 0.49
CTNND1O60716 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CTNND1O60716 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CTNND1O60716 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CTNND1O60716 AL645937.2-201ENST00000396808 931 ntBASIC18.1■□□□□ 0.49
CTNND1O60716 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CTNND1O60716 CALR4P-201ENST00000431943 946 ntBASIC18.1■□□□□ 0.49
CTNND1O60716 MTX1P1-201ENST00000440904 838 ntBASIC18.1■□□□□ 0.49
CTNND1O60716 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC18.1■□□□□ 0.49
CTNND1O60716 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC18.1■□□□□ 0.49
CTNND1O60716 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC18.1■□□□□ 0.49
CTNND1O60716 ARTN-209ENST00000479128 471 ntTSL 3 BASIC18.1■□□□□ 0.49
CTNND1O60716 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC18.1■□□□□ 0.49
CTNND1O60716 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
CTNND1O60716 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CTNND1O60716 ECM1P1-201ENST00000604092 1279 ntBASIC18.1■□□□□ 0.49
CTNND1O60716 AC005695.3-201ENST00000614522 232 ntBASIC18.1■□□□□ 0.49
CTNND1O60716 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CTNND1O60716 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC18.1■□□□□ 0.49
CTNND1O60716 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CTNND1O60716 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
CTNND1O60716 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC18.1■□□□□ 0.49
CTNND1O60716 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
CTNND1O60716 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CTNND1O60716 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CTNND1O60716 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CTNND1O60716 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
CTNND1O60716 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC18.09■□□□□ 0.49
CTNND1O60716 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CTNND1O60716 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CTNND1O60716 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CTNND1O60716 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC18.09■□□□□ 0.49
CTNND1O60716 AC008741.2-201ENST00000612792 3115 ntBASIC18.09■□□□□ 0.49
CTNND1O60716 RPS15-201ENST00000233609 534 ntTSL 2 BASIC18.09■□□□□ 0.49
CTNND1O60716 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CTNND1O60716 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CTNND1O60716 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
CTNND1O60716 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC18.09■□□□□ 0.49
CTNND1O60716 AC004898.1-201ENST00000451057 766 ntBASIC18.09■□□□□ 0.49
CTNND1O60716 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC18.09■□□□□ 0.49
CTNND1O60716 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC18.09■□□□□ 0.49
CTNND1O60716 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CTNND1O60716 AC104982.3-201ENST00000581995 514 ntBASIC18.09■□□□□ 0.49
CTNND1O60716 RPS15-205ENST00000586686 562 ntTSL 5 BASIC18.09■□□□□ 0.49
CTNND1O60716 CYGB-203ENST00000589145 788 ntTSL 3 BASIC18.09■□□□□ 0.49
CTNND1O60716 RPS15-208ENST00000591804 711 ntTSL 5 BASIC18.09■□□□□ 0.49
CTNND1O60716 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CTNND1O60716 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
CTNND1O60716 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
CTNND1O60716 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
CTNND1O60716 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CTNND1O60716 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CTNND1O60716 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CTNND1O60716 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
CTNND1O60716 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CTNND1O60716 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CTNND1O60716 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC18.09■□□□□ 0.49
CTNND1O60716 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CTNND1O60716 AMT-224ENST00000635808 1610 ntTSL 5 BASIC18.09■□□□□ 0.49
CTNND1O60716 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC18.08■□□□□ 0.49
CTNND1O60716 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CTNND1O60716 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CTNND1O60716 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CTNND1O60716 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
CTNND1O60716 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CTNND1O60716 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC18.08■□□□□ 0.49
CTNND1O60716 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CTNND1O60716 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CTNND1O60716 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC18.08■□□□□ 0.49
CTNND1O60716 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC18.08■□□□□ 0.49
CTNND1O60716 GRN-222ENST00000639447 1314 ntTSL 2 BASIC18.08■□□□□ 0.49
CTNND1O60716 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CTNND1O60716 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC18.08■□□□□ 0.48
CTNND1O60716 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CTNND1O60716 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CTNND1O60716 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
CTNND1O60716 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CTNND1O60716 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CTNND1O60716 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC18.08■□□□□ 0.48
CTNND1O60716 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC18.08■□□□□ 0.48
CTNND1O60716 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC18.08■□□□□ 0.48
CTNND1O60716 PFN2-205ENST00000461868 613 ntTSL 2 BASIC18.08■□□□□ 0.48
CTNND1O60716 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC18.08■□□□□ 0.48
CTNND1O60716 AP006547.1-201ENST00000563435 692 ntBASIC18.08■□□□□ 0.48
CTNND1O60716 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC18.08■□□□□ 0.48
CTNND1O60716 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC18.08■□□□□ 0.48
CTNND1O60716 INO80C-210ENST00000590757 595 ntTSL 2 BASIC18.08■□□□□ 0.48
CTNND1O60716 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC18.08■□□□□ 0.48
CTNND1O60716 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms