Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
SGCEO43556 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SGCEO43556 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
SGCEO43556 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SGCEO43556 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SGCEO43556 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
SGCEO43556 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC13.88□□□□□ -0.19
SGCEO43556 AC244021.1-201ENST00000417218 3662 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
SGCEO43556 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
SGCEO43556 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
SGCEO43556 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC13.88□□□□□ -0.19
SGCEO43556 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SGCEO43556 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
SGCEO43556 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
SGCEO43556 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
SGCEO43556 OR2I1P-210ENST00000642037 4691 ntBASIC13.88□□□□□ -0.19
SGCEO43556 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC13.88□□□□□ -0.19
SGCEO43556 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SGCEO43556 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SGCEO43556 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
SGCEO43556 KRT8P12-202ENST00000472924 1397 ntBASIC13.88□□□□□ -0.19
SGCEO43556 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
SGCEO43556 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
SGCEO43556 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC13.88□□□□□ -0.19
SGCEO43556 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
SGCEO43556 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC13.88□□□□□ -0.19
SGCEO43556 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC13.88□□□□□ -0.19
SGCEO43556 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SGCEO43556 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SGCEO43556 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
SGCEO43556 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC13.88□□□□□ -0.19
SGCEO43556 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SGCEO43556 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC13.88□□□□□ -0.19
SGCEO43556 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
SGCEO43556 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
SGCEO43556 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC13.88□□□□□ -0.19
SGCEO43556 VPS29-207ENST00000549970 818 ntTSL 3 BASIC13.88□□□□□ -0.19
SGCEO43556 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
SGCEO43556 AL079307.3-201ENST00000556114 283 ntBASIC13.88□□□□□ -0.19
SGCEO43556 AP001160.2-201ENST00000596071 487 ntBASIC13.88□□□□□ -0.19
SGCEO43556 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC13.88□□□□□ -0.19
SGCEO43556 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC13.88□□□□□ -0.19
SGCEO43556 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
SGCEO43556 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
SGCEO43556 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
SGCEO43556 FES-204ENST00000414248 2327 ntTSL 2 BASIC13.88□□□□□ -0.19
SGCEO43556 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC13.88□□□□□ -0.19
SGCEO43556 PCDHA3-202ENST00000532566 4594 ntBASIC13.88□□□□□ -0.19
SGCEO43556 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC13.88□□□□□ -0.19
SGCEO43556 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC13.88□□□□□ -0.19
SGCEO43556 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC13.88□□□□□ -0.19
SGCEO43556 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC13.88□□□□□ -0.19
SGCEO43556 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SGCEO43556 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SGCEO43556 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SGCEO43556 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SGCEO43556 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
SGCEO43556 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
SGCEO43556 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SGCEO43556 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC13.87□□□□□ -0.19
SGCEO43556 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
SGCEO43556 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SGCEO43556 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
SGCEO43556 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC13.87□□□□□ -0.19
SGCEO43556 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
SGCEO43556 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SGCEO43556 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
SGCEO43556 RUFY1-202ENST00000393438 2454 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
SGCEO43556 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
SGCEO43556 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
SGCEO43556 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
SGCEO43556 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
SGCEO43556 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
SGCEO43556 AC087481.3-201ENST00000602886 1894 ntBASIC13.87□□□□□ -0.19
SGCEO43556 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
SGCEO43556 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SGCEO43556 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
SGCEO43556 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
SGCEO43556 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
SGCEO43556 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
SGCEO43556 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SGCEO43556 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SGCEO43556 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SGCEO43556 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC13.87□□□□□ -0.19
SGCEO43556 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SGCEO43556 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
SGCEO43556 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SGCEO43556 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SGCEO43556 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC13.87□□□□□ -0.19
SGCEO43556 AL139400.1-201ENST00000366220 510 ntBASIC13.87□□□□□ -0.19
SGCEO43556 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
SGCEO43556 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC13.87□□□□□ -0.19
SGCEO43556 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC13.87□□□□□ -0.19
SGCEO43556 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SGCEO43556 SATB1-217ENST00000493952 626 ntTSL 3 BASIC13.87□□□□□ -0.19
SGCEO43556 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SGCEO43556 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC13.87□□□□□ -0.19
SGCEO43556 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC13.87□□□□□ -0.19
SGCEO43556 HNRNPUP1-201ENST00000554987 333 ntBASIC13.87□□□□□ -0.19
SGCEO43556 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC13.87□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms