Protein–RNA interactions for Protein: A0A0B4J249

TRAV5, T-cell receptor alpha variable 5 (Fragment), humanhuman

Predictions only

Length 113 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV5A0A0B4J249 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
TRAV5A0A0B4J249 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
TRAV5A0A0B4J249 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
TRAV5A0A0B4J249 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
TRAV5A0A0B4J249 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
TRAV5A0A0B4J249 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
TRAV5A0A0B4J249 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC12.19□□□□□ -0.46
TRAV5A0A0B4J249 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC12.19□□□□□ -0.46
TRAV5A0A0B4J249 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC12.19□□□□□ -0.46
TRAV5A0A0B4J249 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
TRAV5A0A0B4J249 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
TRAV5A0A0B4J249 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC12.19□□□□□ -0.46
TRAV5A0A0B4J249 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
TRAV5A0A0B4J249 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
TRAV5A0A0B4J249 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
TRAV5A0A0B4J249 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
TRAV5A0A0B4J249 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
TRAV5A0A0B4J249 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 CICP14-201ENST00000629111 2732 ntBASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 USP35-204ENST00000530267 2419 ntTSL 2 BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 IPPK-202ENST00000375522 882 ntTSL 3 BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 RPS8P6-201ENST00000426177 609 ntBASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 KRT18P2-201ENST00000447938 1258 ntBASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 RNA5SP410-201ENST00000516285 106 ntBASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 COQ9-214ENST00000567933 882 ntTSL 3 BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 AC073389.1-201ENST00000595595 795 ntBASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 AC140479.7-201ENST00000636301 2332 ntBASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 LINC01230-201ENST00000625222 3017 ntBASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
TRAV5A0A0B4J249 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
TRAV5A0A0B4J249 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC12.17□□□□□ -0.46
TRAV5A0A0B4J249 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC12.17□□□□□ -0.46
TRAV5A0A0B4J249 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC12.17□□□□□ -0.46
TRAV5A0A0B4J249 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
TRAV5A0A0B4J249 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
TRAV5A0A0B4J249 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
TRAV5A0A0B4J249 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC12.17□□□□□ -0.46
TRAV5A0A0B4J249 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
TRAV5A0A0B4J249 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC12.17□□□□□ -0.46
TRAV5A0A0B4J249 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms