Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC18.02■□□□□ 0.47
CTDP1Q9Y5B0 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CTDP1Q9Y5B0 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC18.02■□□□□ 0.47
CTDP1Q9Y5B0 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC18.02■□□□□ 0.47
CTDP1Q9Y5B0 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CTDP1Q9Y5B0 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC18.02■□□□□ 0.47
CTDP1Q9Y5B0 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
CTDP1Q9Y5B0 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.47
CTDP1Q9Y5B0 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC18.02■□□□□ 0.47
CTDP1Q9Y5B0 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
CTDP1Q9Y5B0 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
CTDP1Q9Y5B0 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
CTDP1Q9Y5B0 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
CTDP1Q9Y5B0 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC18.01■□□□□ 0.47
CTDP1Q9Y5B0 AC018695.7-201ENST00000624587 2492 ntBASIC18.01■□□□□ 0.47
CTDP1Q9Y5B0 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CTDP1Q9Y5B0 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CTDP1Q9Y5B0 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CTDP1Q9Y5B0 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CTDP1Q9Y5B0 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CTDP1Q9Y5B0 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CTDP1Q9Y5B0 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
CTDP1Q9Y5B0 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CTDP1Q9Y5B0 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
CTDP1Q9Y5B0 DRD5P1-201ENST00000456605 1438 ntBASIC18.01■□□□□ 0.47
CTDP1Q9Y5B0 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC18.01■□□□□ 0.47
CTDP1Q9Y5B0 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC18.01■□□□□ 0.47
CTDP1Q9Y5B0 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CTDP1Q9Y5B0 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CTDP1Q9Y5B0 RPF1-202ENST00000370656 724 ntTSL 2 BASIC18.01■□□□□ 0.47
CTDP1Q9Y5B0 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CTDP1Q9Y5B0 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
CTDP1Q9Y5B0 AC012441.1-201ENST00000446669 685 ntBASIC18.01■□□□□ 0.47
CTDP1Q9Y5B0 AC007551.1-201ENST00000457394 519 ntBASIC18.01■□□□□ 0.47
CTDP1Q9Y5B0 AC026410.3-201ENST00000514280 936 ntBASIC18.01■□□□□ 0.47
CTDP1Q9Y5B0 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
CTDP1Q9Y5B0 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC18.01■□□□□ 0.47
CTDP1Q9Y5B0 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CTDP1Q9Y5B0 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC18.01■□□□□ 0.47
CTDP1Q9Y5B0 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
CTDP1Q9Y5B0 ATF5-205ENST00000600336 682 ntTSL 2 BASIC18.01■□□□□ 0.47
CTDP1Q9Y5B0 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC18.01■□□□□ 0.47
CTDP1Q9Y5B0 AC005252.2-201ENST00000624630 1141 ntBASIC18.01■□□□□ 0.47
CTDP1Q9Y5B0 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC18.01■□□□□ 0.47
CTDP1Q9Y5B0 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CTDP1Q9Y5B0 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CTDP1Q9Y5B0 AL161772.1-201ENST00000610494 4412 ntBASIC18.01■□□□□ 0.47
CTDP1Q9Y5B0 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CTDP1Q9Y5B0 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CTDP1Q9Y5B0 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC18.01■□□□□ 0.47
CTDP1Q9Y5B0 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CTDP1Q9Y5B0 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CTDP1Q9Y5B0 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CTDP1Q9Y5B0 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CTDP1Q9Y5B0 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC18■□□□□ 0.47
CTDP1Q9Y5B0 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC18■□□□□ 0.47
CTDP1Q9Y5B0 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
CTDP1Q9Y5B0 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC18■□□□□ 0.47
CTDP1Q9Y5B0 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC18■□□□□ 0.47
CTDP1Q9Y5B0 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC18■□□□□ 0.47
CTDP1Q9Y5B0 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC18■□□□□ 0.47
CTDP1Q9Y5B0 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
CTDP1Q9Y5B0 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
CTDP1Q9Y5B0 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
CTDP1Q9Y5B0 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CTDP1Q9Y5B0 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
CTDP1Q9Y5B0 USE1-206ENST00000595101 1776 ntTSL 2 BASIC18■□□□□ 0.47
CTDP1Q9Y5B0 AC124067.4-201ENST00000519691 2379 ntBASIC18■□□□□ 0.47
CTDP1Q9Y5B0 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC18■□□□□ 0.47
CTDP1Q9Y5B0 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC18■□□□□ 0.47
CTDP1Q9Y5B0 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CTDP1Q9Y5B0 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CTDP1Q9Y5B0 SUN1-204ENST00000403868 978 ntTSL 2 BASIC18■□□□□ 0.47
CTDP1Q9Y5B0 C2orf27AP3-201ENST00000434123 579 ntBASIC18■□□□□ 0.47
CTDP1Q9Y5B0 AC016694.1-201ENST00000434179 700 ntBASIC18■□□□□ 0.47
CTDP1Q9Y5B0 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC18■□□□□ 0.47
CTDP1Q9Y5B0 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CTDP1Q9Y5B0 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC18■□□□□ 0.47
CTDP1Q9Y5B0 BNIP3P42-201ENST00000454982 569 ntBASIC18■□□□□ 0.47
CTDP1Q9Y5B0 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC18■□□□□ 0.47
CTDP1Q9Y5B0 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC18■□□□□ 0.47
CTDP1Q9Y5B0 AC119751.2-201ENST00000504529 210 ntBASIC18■□□□□ 0.47
CTDP1Q9Y5B0 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC18■□□□□ 0.47
CTDP1Q9Y5B0 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC18■□□□□ 0.47
CTDP1Q9Y5B0 IFT20-206ENST00000578122 834 ntTSL 2 BASIC18■□□□□ 0.47
CTDP1Q9Y5B0 IFT20-208ENST00000578985 831 ntTSL 3 BASIC18■□□□□ 0.47
CTDP1Q9Y5B0 BNIP3P29-201ENST00000598302 571 ntBASIC18■□□□□ 0.47
CTDP1Q9Y5B0 AC011447.5-201ENST00000616168 564 ntBASIC18■□□□□ 0.47
CTDP1Q9Y5B0 AL354718.3-201ENST00000616414 581 ntBASIC18■□□□□ 0.47
CTDP1Q9Y5B0 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC18■□□□□ 0.47
CTDP1Q9Y5B0 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC18■□□□□ 0.47
CTDP1Q9Y5B0 WNT11-204ENST00000621122 789 ntTSL 5 BASIC18■□□□□ 0.47
CTDP1Q9Y5B0 CR382287.1-201ENST00000623954 586 ntBASIC18■□□□□ 0.47
CTDP1Q9Y5B0 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC18■□□□□ 0.47
CTDP1Q9Y5B0 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC18■□□□□ 0.47
CTDP1Q9Y5B0 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC18■□□□□ 0.47
CTDP1Q9Y5B0 AC069224.1-201ENST00000566372 1715 ntBASIC18■□□□□ 0.47
CTDP1Q9Y5B0 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC18■□□□□ 0.47
CTDP1Q9Y5B0 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC18■□□□□ 0.47
CTDP1Q9Y5B0 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC18■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms