Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.18
AP4E1Q9UPM8 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC16.21■□□□□ 0.18
AP4E1Q9UPM8 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC16.21■□□□□ 0.18
AP4E1Q9UPM8 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
AP4E1Q9UPM8 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
AP4E1Q9UPM8 AC126365.1-201ENST00000578585 1514 ntBASIC16.2■□□□□ 0.18
AP4E1Q9UPM8 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
AP4E1Q9UPM8 MFF-204ENST00000353339 2186 ntTSL 5 BASIC16.2■□□□□ 0.18
AP4E1Q9UPM8 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
AP4E1Q9UPM8 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
AP4E1Q9UPM8 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC16.2■□□□□ 0.18
AP4E1Q9UPM8 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC16.2■□□□□ 0.18
AP4E1Q9UPM8 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
AP4E1Q9UPM8 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
AP4E1Q9UPM8 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
AP4E1Q9UPM8 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
AP4E1Q9UPM8 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
AP4E1Q9UPM8 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
AP4E1Q9UPM8 AC067930.6-201ENST00000623257 4947 ntBASIC16.2■□□□□ 0.18
AP4E1Q9UPM8 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
AP4E1Q9UPM8 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
AP4E1Q9UPM8 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC16.2■□□□□ 0.18
AP4E1Q9UPM8 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC16.2■□□□□ 0.18
AP4E1Q9UPM8 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC16.2■□□□□ 0.18
AP4E1Q9UPM8 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
AP4E1Q9UPM8 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC16.2■□□□□ 0.18
AP4E1Q9UPM8 UBL5-208ENST00000593087 320 ntTSL 3 BASIC16.2■□□□□ 0.18
AP4E1Q9UPM8 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
AP4E1Q9UPM8 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
AP4E1Q9UPM8 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
AP4E1Q9UPM8 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC16.2■□□□□ 0.18
AP4E1Q9UPM8 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
AP4E1Q9UPM8 CYP2AB1P-202ENST00000454440 1456 ntBASIC16.2■□□□□ 0.18
AP4E1Q9UPM8 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
AP4E1Q9UPM8 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
AP4E1Q9UPM8 TP73-209ENST00000603362 1668 ntTSL 5 BASIC16.2■□□□□ 0.18
AP4E1Q9UPM8 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC16.2■□□□□ 0.18
AP4E1Q9UPM8 AC148477.4-201ENST00000613430 1793 ntBASIC16.2■□□□□ 0.18
AP4E1Q9UPM8 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
AP4E1Q9UPM8 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
AP4E1Q9UPM8 STRN-202ENST00000379213 2254 ntTSL 5 BASIC16.2■□□□□ 0.18
AP4E1Q9UPM8 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
AP4E1Q9UPM8 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC16.2■□□□□ 0.18
AP4E1Q9UPM8 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
AP4E1Q9UPM8 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
AP4E1Q9UPM8 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
AP4E1Q9UPM8 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
AP4E1Q9UPM8 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
AP4E1Q9UPM8 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC16.19■□□□□ 0.18
AP4E1Q9UPM8 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
AP4E1Q9UPM8 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
AP4E1Q9UPM8 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC16.19■□□□□ 0.18
AP4E1Q9UPM8 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
AP4E1Q9UPM8 CELP-203ENST00000624767 2414 ntTSL 5 BASIC16.19■□□□□ 0.18
AP4E1Q9UPM8 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
AP4E1Q9UPM8 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
AP4E1Q9UPM8 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC16.19■□□□□ 0.18
AP4E1Q9UPM8 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
AP4E1Q9UPM8 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
AP4E1Q9UPM8 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
AP4E1Q9UPM8 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC16.19■□□□□ 0.18
AP4E1Q9UPM8 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC16.19■□□□□ 0.18
AP4E1Q9UPM8 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
AP4E1Q9UPM8 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
AP4E1Q9UPM8 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
AP4E1Q9UPM8 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
AP4E1Q9UPM8 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC16.19■□□□□ 0.18
AP4E1Q9UPM8 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
AP4E1Q9UPM8 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
AP4E1Q9UPM8 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC16.19■□□□□ 0.18
AP4E1Q9UPM8 RASL12-203ENST00000434605 982 ntTSL 2 BASIC16.19■□□□□ 0.18
AP4E1Q9UPM8 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC16.19■□□□□ 0.18
AP4E1Q9UPM8 AL589987.1-201ENST00000453380 819 ntBASIC16.19■□□□□ 0.18
AP4E1Q9UPM8 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC16.19■□□□□ 0.18
AP4E1Q9UPM8 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
AP4E1Q9UPM8 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
AP4E1Q9UPM8 NAA60-208ENST00000570819 833 ntTSL 2 BASIC16.19■□□□□ 0.18
AP4E1Q9UPM8 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
AP4E1Q9UPM8 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC16.19■□□□□ 0.18
AP4E1Q9UPM8 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC16.19■□□□□ 0.18
AP4E1Q9UPM8 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
AP4E1Q9UPM8 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC16.19■□□□□ 0.18
AP4E1Q9UPM8 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
AP4E1Q9UPM8 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC16.19■□□□□ 0.18
AP4E1Q9UPM8 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
AP4E1Q9UPM8 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
AP4E1Q9UPM8 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
AP4E1Q9UPM8 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
AP4E1Q9UPM8 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC16.19■□□□□ 0.18
AP4E1Q9UPM8 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC16.19■□□□□ 0.18
AP4E1Q9UPM8 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
AP4E1Q9UPM8 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
AP4E1Q9UPM8 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC16.19■□□□□ 0.18
AP4E1Q9UPM8 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC16.19■□□□□ 0.18
AP4E1Q9UPM8 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
AP4E1Q9UPM8 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
AP4E1Q9UPM8 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
AP4E1Q9UPM8 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
AP4E1Q9UPM8 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
AP4E1Q9UPM8 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 53.5 ms