Protein–RNA interactions for Protein: Q9UI33

SCN11A, Sodium channel protein type 11 subunit alpha, humanhuman

Predictions only

Length 1,791 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN11AQ9UI33 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC19.58■□□□□ 0.72
SCN11AQ9UI33 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SCN11AQ9UI33 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
SCN11AQ9UI33 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SCN11AQ9UI33 AL662890.1-201ENST00000396818 632 ntBASIC19.57■□□□□ 0.72
SCN11AQ9UI33 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC19.57■□□□□ 0.72
SCN11AQ9UI33 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC19.57■□□□□ 0.72
SCN11AQ9UI33 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC19.57■□□□□ 0.72
SCN11AQ9UI33 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC19.57■□□□□ 0.72
SCN11AQ9UI33 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC19.57■□□□□ 0.72
SCN11AQ9UI33 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC19.57■□□□□ 0.72
SCN11AQ9UI33 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SCN11AQ9UI33 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SCN11AQ9UI33 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SCN11AQ9UI33 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC19.57■□□□□ 0.72
SCN11AQ9UI33 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SCN11AQ9UI33 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
SCN11AQ9UI33 AC084018.2-201ENST00000613093 2607 ntBASIC19.57■□□□□ 0.72
SCN11AQ9UI33 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SCN11AQ9UI33 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
SCN11AQ9UI33 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SCN11AQ9UI33 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC19.57■□□□□ 0.72
SCN11AQ9UI33 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC19.57■□□□□ 0.72
SCN11AQ9UI33 DPM3-202ENST00000368399 517 ntBASIC19.57■□□□□ 0.72
SCN11AQ9UI33 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC19.57■□□□□ 0.72
SCN11AQ9UI33 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SCN11AQ9UI33 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC19.57■□□□□ 0.72
SCN11AQ9UI33 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC19.57■□□□□ 0.72
SCN11AQ9UI33 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SCN11AQ9UI33 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SCN11AQ9UI33 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC19.56■□□□□ 0.72
SCN11AQ9UI33 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
SCN11AQ9UI33 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SCN11AQ9UI33 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SCN11AQ9UI33 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SCN11AQ9UI33 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SCN11AQ9UI33 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC19.56■□□□□ 0.72
SCN11AQ9UI33 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
SCN11AQ9UI33 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SCN11AQ9UI33 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SCN11AQ9UI33 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SCN11AQ9UI33 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SCN11AQ9UI33 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
SCN11AQ9UI33 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC19.56■□□□□ 0.72
SCN11AQ9UI33 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SCN11AQ9UI33 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
SCN11AQ9UI33 MIR769-201ENST00000390225 118 ntBASIC19.56■□□□□ 0.72
SCN11AQ9UI33 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SCN11AQ9UI33 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC19.56■□□□□ 0.72
SCN11AQ9UI33 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC19.56■□□□□ 0.72
SCN11AQ9UI33 CRCP-204ENST00000398684 492 ntTSL 2 BASIC19.56■□□□□ 0.72
SCN11AQ9UI33 HLA-DPB2-205ENST00000435074 1188 ntBASIC19.56■□□□□ 0.72
SCN11AQ9UI33 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC19.56■□□□□ 0.72
SCN11AQ9UI33 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC19.56■□□□□ 0.72
SCN11AQ9UI33 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC19.56■□□□□ 0.72
SCN11AQ9UI33 HLA-J-204ENST00000495278 958 ntBASIC19.56■□□□□ 0.72
SCN11AQ9UI33 NUP210P1-202ENST00000504322 710 ntBASIC19.56■□□□□ 0.72
SCN11AQ9UI33 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC19.56■□□□□ 0.72
SCN11AQ9UI33 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC19.56■□□□□ 0.72
SCN11AQ9UI33 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SCN11AQ9UI33 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC19.56■□□□□ 0.72
SCN11AQ9UI33 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC19.56■□□□□ 0.72
SCN11AQ9UI33 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SCN11AQ9UI33 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SCN11AQ9UI33 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
SCN11AQ9UI33 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SCN11AQ9UI33 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC19.56■□□□□ 0.72
SCN11AQ9UI33 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SCN11AQ9UI33 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC19.56■□□□□ 0.72
SCN11AQ9UI33 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SCN11AQ9UI33 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SCN11AQ9UI33 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
SCN11AQ9UI33 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
SCN11AQ9UI33 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SCN11AQ9UI33 AP000845.1-201ENST00000581677 2131 ntBASIC19.55■□□□□ 0.72
SCN11AQ9UI33 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SCN11AQ9UI33 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SCN11AQ9UI33 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
SCN11AQ9UI33 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC19.55■□□□□ 0.72
SCN11AQ9UI33 PDIA3P2-201ENST00000428073 158 ntBASIC19.55■□□□□ 0.72
SCN11AQ9UI33 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC19.55■□□□□ 0.72
SCN11AQ9UI33 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
SCN11AQ9UI33 RN7SL11P-201ENST00000471305 293 ntBASIC19.55■□□□□ 0.72
SCN11AQ9UI33 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC19.55■□□□□ 0.72
SCN11AQ9UI33 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC19.55■□□□□ 0.72
SCN11AQ9UI33 AC090164.2-201ENST00000611487 516 ntBASIC19.55■□□□□ 0.72
SCN11AQ9UI33 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
SCN11AQ9UI33 BID-213ENST00000615414 2236 ntTSL 5 BASIC19.55■□□□□ 0.72
SCN11AQ9UI33 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
SCN11AQ9UI33 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC19.55■□□□□ 0.72
SCN11AQ9UI33 TUBBP5-203ENST00000508529 1334 ntBASIC19.55■□□□□ 0.72
SCN11AQ9UI33 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC19.55■□□□□ 0.72
SCN11AQ9UI33 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC19.55■□□□□ 0.72
SCN11AQ9UI33 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
SCN11AQ9UI33 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC19.55■□□□□ 0.72
SCN11AQ9UI33 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
SCN11AQ9UI33 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SCN11AQ9UI33 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
SCN11AQ9UI33 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
SCN11AQ9UI33 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC19.55■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms