Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC17.3■□□□□ 0.36
VTA1Q9NP79 AP006547.1-201ENST00000563435 692 ntBASIC17.3■□□□□ 0.36
VTA1Q9NP79 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC17.3■□□□□ 0.36
VTA1Q9NP79 SAMD11P1-201ENST00000571429 661 ntBASIC17.3■□□□□ 0.36
VTA1Q9NP79 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VTA1Q9NP79 AC084346.2-201ENST00000607097 949 ntBASIC17.3■□□□□ 0.36
VTA1Q9NP79 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC17.3■□□□□ 0.36
VTA1Q9NP79 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
VTA1Q9NP79 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC17.3■□□□□ 0.36
VTA1Q9NP79 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC17.3■□□□□ 0.36
VTA1Q9NP79 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
VTA1Q9NP79 AL603832.2-201ENST00000566195 2125 ntBASIC17.3■□□□□ 0.36
VTA1Q9NP79 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VTA1Q9NP79 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC17.3■□□□□ 0.36
VTA1Q9NP79 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VTA1Q9NP79 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VTA1Q9NP79 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
VTA1Q9NP79 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VTA1Q9NP79 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
VTA1Q9NP79 ACE-203ENST00000413513 2237 ntTSL 2 BASIC17.29■□□□□ 0.36
VTA1Q9NP79 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VTA1Q9NP79 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
VTA1Q9NP79 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VTA1Q9NP79 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VTA1Q9NP79 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VTA1Q9NP79 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC17.29■□□□□ 0.36
VTA1Q9NP79 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC17.29■□□□□ 0.36
VTA1Q9NP79 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
VTA1Q9NP79 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC17.29■□□□□ 0.36
VTA1Q9NP79 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC17.29■□□□□ 0.36
VTA1Q9NP79 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VTA1Q9NP79 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VTA1Q9NP79 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VTA1Q9NP79 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VTA1Q9NP79 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC17.29■□□□□ 0.36
VTA1Q9NP79 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
VTA1Q9NP79 SNX21-203ENST00000372541 771 ntTSL 2 BASIC17.29■□□□□ 0.36
VTA1Q9NP79 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC17.29■□□□□ 0.36
VTA1Q9NP79 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
VTA1Q9NP79 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
VTA1Q9NP79 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC17.29■□□□□ 0.36
VTA1Q9NP79 AC245100.3-201ENST00000441281 285 ntBASIC17.29■□□□□ 0.36
VTA1Q9NP79 AC004898.1-201ENST00000451057 766 ntBASIC17.29■□□□□ 0.36
VTA1Q9NP79 APOA2-204ENST00000464492 530 ntTSL 3 BASIC17.29■□□□□ 0.36
VTA1Q9NP79 ARTN-209ENST00000479128 471 ntTSL 3 BASIC17.29■□□□□ 0.36
VTA1Q9NP79 TPI1-206ENST00000488464 791 ntTSL 5 BASIC17.29■□□□□ 0.36
VTA1Q9NP79 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC17.29■□□□□ 0.36
VTA1Q9NP79 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC17.29■□□□□ 0.36
VTA1Q9NP79 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
VTA1Q9NP79 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC17.29■□□□□ 0.36
VTA1Q9NP79 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC17.29■□□□□ 0.36
VTA1Q9NP79 AC104982.3-201ENST00000581995 514 ntBASIC17.29■□□□□ 0.36
VTA1Q9NP79 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC17.29■□□□□ 0.36
VTA1Q9NP79 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC17.29■□□□□ 0.36
VTA1Q9NP79 AL603764.1-201ENST00000636452 321 ntBASIC17.29■□□□□ 0.36
VTA1Q9NP79 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC17.29■□□□□ 0.36
VTA1Q9NP79 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VTA1Q9NP79 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VTA1Q9NP79 CYP2T1P-202ENST00000641596 2535 ntBASIC17.29■□□□□ 0.36
VTA1Q9NP79 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
VTA1Q9NP79 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VTA1Q9NP79 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VTA1Q9NP79 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
VTA1Q9NP79 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
VTA1Q9NP79 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC17.29■□□□□ 0.36
VTA1Q9NP79 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VTA1Q9NP79 HARS-202ENST00000415192 1401 ntTSL 2 BASIC17.29■□□□□ 0.36
VTA1Q9NP79 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC17.29■□□□□ 0.36
VTA1Q9NP79 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VTA1Q9NP79 BLK-205ENST00000529894 2017 ntTSL 5 BASIC17.28■□□□□ 0.36
VTA1Q9NP79 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VTA1Q9NP79 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC17.28■□□□□ 0.36
VTA1Q9NP79 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
VTA1Q9NP79 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VTA1Q9NP79 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
VTA1Q9NP79 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
VTA1Q9NP79 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VTA1Q9NP79 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC17.28■□□□□ 0.36
VTA1Q9NP79 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
VTA1Q9NP79 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VTA1Q9NP79 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC17.28■□□□□ 0.36
VTA1Q9NP79 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VTA1Q9NP79 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VTA1Q9NP79 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
VTA1Q9NP79 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC17.28■□□□□ 0.36
VTA1Q9NP79 CALR4P-201ENST00000431943 946 ntBASIC17.28■□□□□ 0.36
VTA1Q9NP79 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC17.28■□□□□ 0.36
VTA1Q9NP79 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC17.28■□□□□ 0.36
VTA1Q9NP79 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VTA1Q9NP79 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VTA1Q9NP79 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC17.28■□□□□ 0.36
VTA1Q9NP79 AL096828.3-201ENST00000615354 462 ntBASIC17.28■□□□□ 0.36
VTA1Q9NP79 AC068587.10-201ENST00000641210 219 ntBASIC17.28■□□□□ 0.36
VTA1Q9NP79 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VTA1Q9NP79 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
VTA1Q9NP79 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC17.28■□□□□ 0.36
VTA1Q9NP79 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VTA1Q9NP79 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC17.28■□□□□ 0.36
VTA1Q9NP79 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
VTA1Q9NP79 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 68.3 ms