Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC15.53■□□□□ 0.08
TRIM39Q9HCM9 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC15.53■□□□□ 0.08
TRIM39Q9HCM9 TP53TG3HP-202ENST00000569755 579 ntBASIC15.53■□□□□ 0.08
TRIM39Q9HCM9 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC15.53■□□□□ 0.08
TRIM39Q9HCM9 AL391069.4-201ENST00000609583 481 ntBASIC15.53■□□□□ 0.08
TRIM39Q9HCM9 AL158212.4-201ENST00000624062 1286 ntBASIC15.53■□□□□ 0.08
TRIM39Q9HCM9 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC15.53■□□□□ 0.08
TRIM39Q9HCM9 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM39Q9HCM9 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM39Q9HCM9 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM39Q9HCM9 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM39Q9HCM9 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM39Q9HCM9 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC15.53■□□□□ 0.08
TRIM39Q9HCM9 TKT-202ENST00000423516 2075 ntTSL 2 BASIC15.53■□□□□ 0.08
TRIM39Q9HCM9 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM39Q9HCM9 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
TRIM39Q9HCM9 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM39Q9HCM9 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
TRIM39Q9HCM9 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
TRIM39Q9HCM9 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
TRIM39Q9HCM9 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
TRIM39Q9HCM9 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
TRIM39Q9HCM9 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
TRIM39Q9HCM9 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRIM39Q9HCM9 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
TRIM39Q9HCM9 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC15.52■□□□□ 0.08
TRIM39Q9HCM9 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC15.52■□□□□ 0.08
TRIM39Q9HCM9 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRIM39Q9HCM9 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
TRIM39Q9HCM9 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC15.52■□□□□ 0.08
TRIM39Q9HCM9 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRIM39Q9HCM9 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRIM39Q9HCM9 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.08
TRIM39Q9HCM9 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC15.52■□□□□ 0.08
TRIM39Q9HCM9 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC15.52■□□□□ 0.08
TRIM39Q9HCM9 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC15.52■□□□□ 0.08
TRIM39Q9HCM9 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC15.52■□□□□ 0.08
TRIM39Q9HCM9 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC15.52■□□□□ 0.08
TRIM39Q9HCM9 FADS2-205ENST00000517839 469 ntTSL 3 BASIC15.52■□□□□ 0.08
TRIM39Q9HCM9 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC15.52■□□□□ 0.08
TRIM39Q9HCM9 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC15.52■□□□□ 0.08
TRIM39Q9HCM9 CHCHD2P3-201ENST00000603038 451 ntBASIC15.52■□□□□ 0.08
TRIM39Q9HCM9 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC15.52■□□□□ 0.08
TRIM39Q9HCM9 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC15.52■□□□□ 0.08
TRIM39Q9HCM9 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC15.52■□□□□ 0.08
TRIM39Q9HCM9 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
TRIM39Q9HCM9 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC15.52■□□□□ 0.08
TRIM39Q9HCM9 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC15.52■□□□□ 0.08
TRIM39Q9HCM9 AMT-233ENST00000636522 1620 ntTSL 2 BASIC15.52■□□□□ 0.08
TRIM39Q9HCM9 ILF3-AS1-201ENST00000591501 1983 ntBASIC15.52■□□□□ 0.07
TRIM39Q9HCM9 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC15.52■□□□□ 0.07
TRIM39Q9HCM9 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
TRIM39Q9HCM9 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
TRIM39Q9HCM9 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
TRIM39Q9HCM9 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.07
TRIM39Q9HCM9 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
TRIM39Q9HCM9 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
TRIM39Q9HCM9 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC15.52■□□□□ 0.07
TRIM39Q9HCM9 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
TRIM39Q9HCM9 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
TRIM39Q9HCM9 DBET-201ENST00000630918 3363 ntBASIC15.52■□□□□ 0.07
TRIM39Q9HCM9 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.07
TRIM39Q9HCM9 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
TRIM39Q9HCM9 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
TRIM39Q9HCM9 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM39Q9HCM9 PRAL-201ENST00000624952 3286 ntBASIC15.51■□□□□ 0.07
TRIM39Q9HCM9 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
TRIM39Q9HCM9 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM39Q9HCM9 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC15.51■□□□□ 0.07
TRIM39Q9HCM9 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC15.51■□□□□ 0.07
TRIM39Q9HCM9 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC15.51■□□□□ 0.07
TRIM39Q9HCM9 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
TRIM39Q9HCM9 LOX-206ENST00000639739 1626 ntTSL 5 BASIC15.51■□□□□ 0.07
TRIM39Q9HCM9 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM39Q9HCM9 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC15.51■□□□□ 0.07
TRIM39Q9HCM9 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM39Q9HCM9 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM39Q9HCM9 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
TRIM39Q9HCM9 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
TRIM39Q9HCM9 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC15.51■□□□□ 0.07
TRIM39Q9HCM9 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM39Q9HCM9 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC15.51■□□□□ 0.07
TRIM39Q9HCM9 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
TRIM39Q9HCM9 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
TRIM39Q9HCM9 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
TRIM39Q9HCM9 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC15.51■□□□□ 0.07
TRIM39Q9HCM9 RN7SL399P-201ENST00000471648 279 ntBASIC15.51■□□□□ 0.07
TRIM39Q9HCM9 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
TRIM39Q9HCM9 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC15.51■□□□□ 0.07
TRIM39Q9HCM9 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC15.51■□□□□ 0.07
TRIM39Q9HCM9 AC140912.1-201ENST00000577171 1054 ntBASIC15.51■□□□□ 0.07
TRIM39Q9HCM9 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM39Q9HCM9 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
TRIM39Q9HCM9 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
TRIM39Q9HCM9 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC15.51■□□□□ 0.07
TRIM39Q9HCM9 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM39Q9HCM9 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC15.51■□□□□ 0.07
TRIM39Q9HCM9 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM39Q9HCM9 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM39Q9HCM9 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC15.51■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms