Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
VPS39Q96JC1 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
VPS39Q96JC1 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC15.7■□□□□ 0.1
VPS39Q96JC1 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC15.7■□□□□ 0.1
VPS39Q96JC1 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VPS39Q96JC1 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC15.7■□□□□ 0.1
VPS39Q96JC1 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
VPS39Q96JC1 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VPS39Q96JC1 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VPS39Q96JC1 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VPS39Q96JC1 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC15.7■□□□□ 0.1
VPS39Q96JC1 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VPS39Q96JC1 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VPS39Q96JC1 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VPS39Q96JC1 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VPS39Q96JC1 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VPS39Q96JC1 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
VPS39Q96JC1 RBM39-205ENST00000397370 612 ntTSL 2 BASIC15.7■□□□□ 0.1
VPS39Q96JC1 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC15.7■□□□□ 0.1
VPS39Q96JC1 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC15.7■□□□□ 0.1
VPS39Q96JC1 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VPS39Q96JC1 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC15.7■□□□□ 0.1
VPS39Q96JC1 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC15.7■□□□□ 0.1
VPS39Q96JC1 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC15.7■□□□□ 0.1
VPS39Q96JC1 FAM58DP-201ENST00000428076 619 ntBASIC15.7■□□□□ 0.1
VPS39Q96JC1 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC15.7■□□□□ 0.1
VPS39Q96JC1 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VPS39Q96JC1 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC15.7■□□□□ 0.1
VPS39Q96JC1 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC15.7■□□□□ 0.1
VPS39Q96JC1 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VPS39Q96JC1 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC15.7■□□□□ 0.1
VPS39Q96JC1 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC15.7■□□□□ 0.1
VPS39Q96JC1 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC15.7■□□□□ 0.1
VPS39Q96JC1 AL671883.3-201ENST00000603274 991 ntBASIC15.7■□□□□ 0.1
VPS39Q96JC1 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC15.7■□□□□ 0.1
VPS39Q96JC1 AC018529.1-201ENST00000613063 361 ntBASIC15.7■□□□□ 0.1
VPS39Q96JC1 AL513210.1-201ENST00000629608 234 ntBASIC15.7■□□□□ 0.1
VPS39Q96JC1 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VPS39Q96JC1 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VPS39Q96JC1 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
VPS39Q96JC1 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VPS39Q96JC1 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC15.7■□□□□ 0.1
VPS39Q96JC1 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC15.7■□□□□ 0.1
VPS39Q96JC1 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC15.7■□□□□ 0.1
VPS39Q96JC1 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC15.7■□□□□ 0.1
VPS39Q96JC1 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
VPS39Q96JC1 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC15.7■□□□□ 0.1
VPS39Q96JC1 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VPS39Q96JC1 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC15.7■□□□□ 0.1
VPS39Q96JC1 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
VPS39Q96JC1 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC15.69■□□□□ 0.1
VPS39Q96JC1 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS39Q96JC1 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
VPS39Q96JC1 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS39Q96JC1 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
VPS39Q96JC1 RER1-203ENST00000378513 3000 ntTSL 3 BASIC15.69■□□□□ 0.1
VPS39Q96JC1 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC15.69■□□□□ 0.1
VPS39Q96JC1 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC15.69■□□□□ 0.1
VPS39Q96JC1 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC15.69■□□□□ 0.1
VPS39Q96JC1 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
VPS39Q96JC1 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS39Q96JC1 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
VPS39Q96JC1 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
VPS39Q96JC1 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS39Q96JC1 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
VPS39Q96JC1 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
VPS39Q96JC1 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC15.69■□□□□ 0.1
VPS39Q96JC1 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC15.69■□□□□ 0.1
VPS39Q96JC1 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
VPS39Q96JC1 AL627223.1-201ENST00000416693 442 ntBASIC15.69■□□□□ 0.1
VPS39Q96JC1 AP000347.1-202ENST00000435868 847 ntBASIC15.69■□□□□ 0.1
VPS39Q96JC1 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS39Q96JC1 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS39Q96JC1 NME4-207ENST00000450036 985 ntTSL 3 BASIC15.69■□□□□ 0.1
VPS39Q96JC1 GATD1-206ENST00000526325 756 ntTSL 5 BASIC15.69■□□□□ 0.1
VPS39Q96JC1 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC15.69■□□□□ 0.1
VPS39Q96JC1 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC15.69■□□□□ 0.1
VPS39Q96JC1 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC15.69■□□□□ 0.1
VPS39Q96JC1 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC15.69■□□□□ 0.1
VPS39Q96JC1 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC15.69■□□□□ 0.1
VPS39Q96JC1 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
VPS39Q96JC1 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
VPS39Q96JC1 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
VPS39Q96JC1 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS39Q96JC1 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS39Q96JC1 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS39Q96JC1 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS39Q96JC1 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS39Q96JC1 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC15.69■□□□□ 0.1
VPS39Q96JC1 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC15.69■□□□□ 0.1
VPS39Q96JC1 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS39Q96JC1 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
VPS39Q96JC1 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS39Q96JC1 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS39Q96JC1 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
VPS39Q96JC1 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
VPS39Q96JC1 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
VPS39Q96JC1 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
VPS39Q96JC1 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
VPS39Q96JC1 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC15.68■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms