Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
SYNE4Q8N205 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
SYNE4Q8N205 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC19.22■□□□□ 0.67
SYNE4Q8N205 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SYNE4Q8N205 EIF3FP3-201ENST00000434851 1086 ntBASIC19.22■□□□□ 0.67
SYNE4Q8N205 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC19.22■□□□□ 0.67
SYNE4Q8N205 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC19.22■□□□□ 0.67
SYNE4Q8N205 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC19.22■□□□□ 0.67
SYNE4Q8N205 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC19.22■□□□□ 0.67
SYNE4Q8N205 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC19.22■□□□□ 0.67
SYNE4Q8N205 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC19.22■□□□□ 0.67
SYNE4Q8N205 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
SYNE4Q8N205 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SYNE4Q8N205 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SYNE4Q8N205 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
SYNE4Q8N205 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SYNE4Q8N205 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
SYNE4Q8N205 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SYNE4Q8N205 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SYNE4Q8N205 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SYNE4Q8N205 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SYNE4Q8N205 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
SYNE4Q8N205 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
SYNE4Q8N205 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
SYNE4Q8N205 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC19.22■□□□□ 0.67
SYNE4Q8N205 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC19.21■□□□□ 0.67
SYNE4Q8N205 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SYNE4Q8N205 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SYNE4Q8N205 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
SYNE4Q8N205 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SYNE4Q8N205 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SYNE4Q8N205 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SYNE4Q8N205 HR-201ENST00000312841 5351 ntTSL 5 BASIC19.21■□□□□ 0.67
SYNE4Q8N205 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC19.21■□□□□ 0.67
SYNE4Q8N205 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SYNE4Q8N205 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
SYNE4Q8N205 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SYNE4Q8N205 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
SYNE4Q8N205 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SYNE4Q8N205 AL139094.1-201ENST00000405549 1188 ntBASIC19.21■□□□□ 0.67
SYNE4Q8N205 HARS-202ENST00000415192 1401 ntTSL 2 BASIC19.21■□□□□ 0.67
SYNE4Q8N205 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC19.21■□□□□ 0.67
SYNE4Q8N205 FNTAP2-201ENST00000430308 634 ntBASIC19.21■□□□□ 0.67
SYNE4Q8N205 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC19.21■□□□□ 0.67
SYNE4Q8N205 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SYNE4Q8N205 AC005077.2-201ENST00000449786 690 ntBASIC19.21■□□□□ 0.67
SYNE4Q8N205 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC19.21■□□□□ 0.67
SYNE4Q8N205 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC19.21■□□□□ 0.67
SYNE4Q8N205 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC19.21■□□□□ 0.67
SYNE4Q8N205 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC19.21■□□□□ 0.67
SYNE4Q8N205 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
SYNE4Q8N205 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC19.21■□□□□ 0.67
SYNE4Q8N205 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC19.21■□□□□ 0.67
SYNE4Q8N205 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC19.21■□□□□ 0.67
SYNE4Q8N205 AL096828.3-201ENST00000615354 462 ntBASIC19.21■□□□□ 0.67
SYNE4Q8N205 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
SYNE4Q8N205 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SYNE4Q8N205 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
SYNE4Q8N205 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SYNE4Q8N205 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SYNE4Q8N205 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
SYNE4Q8N205 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
SYNE4Q8N205 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
SYNE4Q8N205 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
SYNE4Q8N205 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC19.21■□□□□ 0.67
SYNE4Q8N205 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.66
SYNE4Q8N205 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.66
SYNE4Q8N205 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC19.2■□□□□ 0.66
SYNE4Q8N205 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC19.2■□□□□ 0.66
SYNE4Q8N205 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
SYNE4Q8N205 TNRC18P3-201ENST00000441896 2691 ntBASIC19.2■□□□□ 0.66
SYNE4Q8N205 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SYNE4Q8N205 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SYNE4Q8N205 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SYNE4Q8N205 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SYNE4Q8N205 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC19.2■□□□□ 0.66
SYNE4Q8N205 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC19.2■□□□□ 0.66
SYNE4Q8N205 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
SYNE4Q8N205 AP006547.1-201ENST00000563435 692 ntBASIC19.2■□□□□ 0.66
SYNE4Q8N205 CYGB-203ENST00000589145 788 ntTSL 3 BASIC19.2■□□□□ 0.66
SYNE4Q8N205 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
SYNE4Q8N205 AC016629.1-201ENST00000596579 586 ntBASIC19.2■□□□□ 0.66
SYNE4Q8N205 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SYNE4Q8N205 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SYNE4Q8N205 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SYNE4Q8N205 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SYNE4Q8N205 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
SYNE4Q8N205 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC19.2■□□□□ 0.66
SYNE4Q8N205 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC19.2■□□□□ 0.66
SYNE4Q8N205 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC19.2■□□□□ 0.66
SYNE4Q8N205 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SYNE4Q8N205 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
SYNE4Q8N205 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SYNE4Q8N205 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SYNE4Q8N205 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SYNE4Q8N205 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SYNE4Q8N205 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SYNE4Q8N205 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SYNE4Q8N205 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC19.19■□□□□ 0.66
SYNE4Q8N205 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms