Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC17.26■□□□□ 0.35
CCDC60Q8IWA6 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC60Q8IWA6 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
CCDC60Q8IWA6 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
CCDC60Q8IWA6 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC17.26■□□□□ 0.35
CCDC60Q8IWA6 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC60Q8IWA6 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC60Q8IWA6 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
CCDC60Q8IWA6 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC60Q8IWA6 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC17.26■□□□□ 0.35
CCDC60Q8IWA6 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC17.26■□□□□ 0.35
CCDC60Q8IWA6 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC60Q8IWA6 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC60Q8IWA6 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC60Q8IWA6 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC60Q8IWA6 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
CCDC60Q8IWA6 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC60Q8IWA6 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC60Q8IWA6 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC60Q8IWA6 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC60Q8IWA6 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC17.25■□□□□ 0.35
CCDC60Q8IWA6 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC60Q8IWA6 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC60Q8IWA6 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC17.25■□□□□ 0.35
CCDC60Q8IWA6 KRT223P-202ENST00000449164 1292 ntBASIC17.25■□□□□ 0.35
CCDC60Q8IWA6 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC17.25■□□□□ 0.35
CCDC60Q8IWA6 APRT-204ENST00000563655 709 ntTSL 5 BASIC17.25■□□□□ 0.35
CCDC60Q8IWA6 AP005482.1-201ENST00000563722 1273 ntBASIC17.25■□□□□ 0.35
CCDC60Q8IWA6 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC17.25■□□□□ 0.35
CCDC60Q8IWA6 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC60Q8IWA6 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC17.25■□□□□ 0.35
CCDC60Q8IWA6 Six3os1_5.1-201ENST00000611000 271 ntBASIC17.25■□□□□ 0.35
CCDC60Q8IWA6 AC244669.2-201ENST00000612320 853 ntBASIC17.25■□□□□ 0.35
CCDC60Q8IWA6 AP005019.2-201ENST00000615104 511 ntBASIC17.25■□□□□ 0.35
CCDC60Q8IWA6 BX539320.1-201ENST00000623759 877 ntBASIC17.25■□□□□ 0.35
CCDC60Q8IWA6 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
CCDC60Q8IWA6 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
CCDC60Q8IWA6 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
CCDC60Q8IWA6 AC090616.6-203ENST00000579186 1945 ntBASIC17.25■□□□□ 0.35
CCDC60Q8IWA6 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC17.25■□□□□ 0.35
CCDC60Q8IWA6 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC17.25■□□□□ 0.35
CCDC60Q8IWA6 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC17.25■□□□□ 0.35
CCDC60Q8IWA6 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
CCDC60Q8IWA6 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC60Q8IWA6 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC60Q8IWA6 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC60Q8IWA6 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC60Q8IWA6 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC60Q8IWA6 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC60Q8IWA6 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC17.24■□□□□ 0.35
CCDC60Q8IWA6 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
CCDC60Q8IWA6 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC60Q8IWA6 AC093525.8-201ENST00000624099 1342 ntBASIC17.24■□□□□ 0.35
CCDC60Q8IWA6 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC60Q8IWA6 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC17.24■□□□□ 0.35
CCDC60Q8IWA6 F11R-206ENST00000621309 4770 ntTSL 5 BASIC17.24■□□□□ 0.35
CCDC60Q8IWA6 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC17.24■□□□□ 0.35
CCDC60Q8IWA6 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC60Q8IWA6 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC60Q8IWA6 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC17.24■□□□□ 0.35
CCDC60Q8IWA6 RNU1-114P-201ENST00000365297 166 ntBASIC17.24■□□□□ 0.35
CCDC60Q8IWA6 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC60Q8IWA6 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC17.24■□□□□ 0.35
CCDC60Q8IWA6 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC60Q8IWA6 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC17.24■□□□□ 0.35
CCDC60Q8IWA6 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC17.24■□□□□ 0.35
CCDC60Q8IWA6 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
CCDC60Q8IWA6 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC17.24■□□□□ 0.35
CCDC60Q8IWA6 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC17.24■□□□□ 0.35
CCDC60Q8IWA6 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC17.24■□□□□ 0.35
CCDC60Q8IWA6 AC133552.6-201ENST00000613406 534 ntBASIC17.24■□□□□ 0.35
CCDC60Q8IWA6 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
CCDC60Q8IWA6 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC60Q8IWA6 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC60Q8IWA6 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC17.24■□□□□ 0.35
CCDC60Q8IWA6 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC60Q8IWA6 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC17.24■□□□□ 0.35
CCDC60Q8IWA6 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC60Q8IWA6 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC60Q8IWA6 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC60Q8IWA6 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC17.23■□□□□ 0.35
CCDC60Q8IWA6 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC17.23■□□□□ 0.35
CCDC60Q8IWA6 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC60Q8IWA6 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC60Q8IWA6 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC17.23■□□□□ 0.35
CCDC60Q8IWA6 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC60Q8IWA6 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC60Q8IWA6 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC60Q8IWA6 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC17.23■□□□□ 0.35
CCDC60Q8IWA6 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC60Q8IWA6 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
CCDC60Q8IWA6 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC17.23■□□□□ 0.35
CCDC60Q8IWA6 PGGT1BP2-201ENST00000398621 1028 ntBASIC17.23■□□□□ 0.35
CCDC60Q8IWA6 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC17.23■□□□□ 0.35
CCDC60Q8IWA6 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC17.23■□□□□ 0.35
CCDC60Q8IWA6 RPS2P32-201ENST00000439199 892 ntBASIC17.23■□□□□ 0.35
CCDC60Q8IWA6 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC17.23■□□□□ 0.35
CCDC60Q8IWA6 KLF2P4-201ENST00000451959 1225 ntBASIC17.23■□□□□ 0.35
CCDC60Q8IWA6 AC007551.1-201ENST00000457394 519 ntBASIC17.23■□□□□ 0.35
CCDC60Q8IWA6 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 53.6 ms