Protein–RNA interactions for Protein: Q86TL0

ATG4D, Cysteine protease ATG4D, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4DQ86TL0 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ATG4DQ86TL0 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
ATG4DQ86TL0 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
ATG4DQ86TL0 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
ATG4DQ86TL0 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC14.16□□□□□ -0.14
ATG4DQ86TL0 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC14.16□□□□□ -0.14
ATG4DQ86TL0 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
ATG4DQ86TL0 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
ATG4DQ86TL0 TMPRSS11CP-201ENST00000453277 683 ntBASIC14.16□□□□□ -0.14
ATG4DQ86TL0 OARD1-208ENST00000469104 704 ntTSL 2 BASIC14.16□□□□□ -0.14
ATG4DQ86TL0 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
ATG4DQ86TL0 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
ATG4DQ86TL0 UBL5-208ENST00000593087 320 ntTSL 3 BASIC14.16□□□□□ -0.14
ATG4DQ86TL0 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
ATG4DQ86TL0 TEX48-202ENST00000612244 662 ntTSL 3 BASIC14.16□□□□□ -0.14
ATG4DQ86TL0 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC14.16□□□□□ -0.14
ATG4DQ86TL0 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
ATG4DQ86TL0 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
ATG4DQ86TL0 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC14.16□□□□□ -0.14
ATG4DQ86TL0 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC14.16□□□□□ -0.14
ATG4DQ86TL0 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
ATG4DQ86TL0 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC14.16□□□□□ -0.14
ATG4DQ86TL0 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
ATG4DQ86TL0 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
ATG4DQ86TL0 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ATG4DQ86TL0 MST1L-201ENST00000442552 2185 ntBASIC14.16□□□□□ -0.14
ATG4DQ86TL0 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC14.16□□□□□ -0.14
ATG4DQ86TL0 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ATG4DQ86TL0 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
ATG4DQ86TL0 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ATG4DQ86TL0 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
ATG4DQ86TL0 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ATG4DQ86TL0 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC14.16□□□□□ -0.14
ATG4DQ86TL0 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ATG4DQ86TL0 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC14.15□□□□□ -0.14
ATG4DQ86TL0 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ATG4DQ86TL0 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC14.15□□□□□ -0.14
ATG4DQ86TL0 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC14.15□□□□□ -0.14
ATG4DQ86TL0 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ATG4DQ86TL0 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
ATG4DQ86TL0 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ATG4DQ86TL0 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
ATG4DQ86TL0 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC14.15□□□□□ -0.14
ATG4DQ86TL0 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC14.15□□□□□ -0.14
ATG4DQ86TL0 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
ATG4DQ86TL0 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ATG4DQ86TL0 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ATG4DQ86TL0 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ATG4DQ86TL0 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC14.15□□□□□ -0.14
ATG4DQ86TL0 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ATG4DQ86TL0 CYP2AB1P-202ENST00000454440 1456 ntBASIC14.15□□□□□ -0.14
ATG4DQ86TL0 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ATG4DQ86TL0 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC14.15□□□□□ -0.14
ATG4DQ86TL0 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC14.15□□□□□ -0.14
ATG4DQ86TL0 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC14.15□□□□□ -0.14
ATG4DQ86TL0 COX20P2-201ENST00000452636 358 ntBASIC14.15□□□□□ -0.14
ATG4DQ86TL0 AC009477.1-201ENST00000452936 217 ntBASIC14.15□□□□□ -0.14
ATG4DQ86TL0 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
ATG4DQ86TL0 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC14.15□□□□□ -0.14
ATG4DQ86TL0 KRT18P43-201ENST00000469825 1281 ntBASIC14.15□□□□□ -0.14
ATG4DQ86TL0 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
ATG4DQ86TL0 LINC02560-201ENST00000596379 459 ntBASIC14.15□□□□□ -0.14
ATG4DQ86TL0 5S_rRNA.22-201ENST00000614916 106 ntBASIC14.15□□□□□ -0.14
ATG4DQ86TL0 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
ATG4DQ86TL0 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
ATG4DQ86TL0 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
ATG4DQ86TL0 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC14.15□□□□□ -0.14
ATG4DQ86TL0 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
ATG4DQ86TL0 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC14.15□□□□□ -0.14
ATG4DQ86TL0 AL121723.1-201ENST00000445194 1519 ntBASIC14.15□□□□□ -0.14
ATG4DQ86TL0 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
ATG4DQ86TL0 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
ATG4DQ86TL0 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC14.15□□□□□ -0.14
ATG4DQ86TL0 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.15
ATG4DQ86TL0 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC14.15□□□□□ -0.15
ATG4DQ86TL0 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC14.15□□□□□ -0.15
ATG4DQ86TL0 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.15
ATG4DQ86TL0 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
ATG4DQ86TL0 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
ATG4DQ86TL0 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
ATG4DQ86TL0 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
ATG4DQ86TL0 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
ATG4DQ86TL0 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
ATG4DQ86TL0 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
ATG4DQ86TL0 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
ATG4DQ86TL0 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
ATG4DQ86TL0 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
ATG4DQ86TL0 AC138969.3-201ENST00000546612 1459 ntBASIC14.14□□□□□ -0.15
ATG4DQ86TL0 AC138932.2-201ENST00000548268 1459 ntBASIC14.14□□□□□ -0.15
ATG4DQ86TL0 AC126755.4-201ENST00000549796 1459 ntBASIC14.14□□□□□ -0.15
ATG4DQ86TL0 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
ATG4DQ86TL0 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
ATG4DQ86TL0 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
ATG4DQ86TL0 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
ATG4DQ86TL0 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC14.14□□□□□ -0.15
ATG4DQ86TL0 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC14.14□□□□□ -0.15
ATG4DQ86TL0 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
ATG4DQ86TL0 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC14.14□□□□□ -0.15
ATG4DQ86TL0 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
ATG4DQ86TL0 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms