Protein–RNA interactions for Protein: Q70EL4

USP43, Ubiquitin carboxyl-terminal hydrolase 43, humanhuman

Predictions only

Length 1,123 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP43Q70EL4 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
USP43Q70EL4 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
USP43Q70EL4 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
USP43Q70EL4 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
USP43Q70EL4 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.11
USP43Q70EL4 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
USP43Q70EL4 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.11
USP43Q70EL4 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC14.33□□□□□ -0.11
USP43Q70EL4 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
USP43Q70EL4 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.11
USP43Q70EL4 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
USP43Q70EL4 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
USP43Q70EL4 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
USP43Q70EL4 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC14.33□□□□□ -0.12
USP43Q70EL4 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
USP43Q70EL4 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
USP43Q70EL4 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
USP43Q70EL4 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC14.33□□□□□ -0.12
USP43Q70EL4 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
USP43Q70EL4 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
USP43Q70EL4 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
USP43Q70EL4 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
USP43Q70EL4 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
USP43Q70EL4 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
USP43Q70EL4 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
USP43Q70EL4 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
USP43Q70EL4 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
USP43Q70EL4 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
USP43Q70EL4 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
USP43Q70EL4 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC14.33□□□□□ -0.12
USP43Q70EL4 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC14.33□□□□□ -0.12
USP43Q70EL4 CRCP-205ENST00000431089 942 ntTSL 2 BASIC14.33□□□□□ -0.12
USP43Q70EL4 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC14.33□□□□□ -0.12
USP43Q70EL4 RNF151-202ENST00000569210 853 ntTSL 2 BASIC14.33□□□□□ -0.12
USP43Q70EL4 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC14.33□□□□□ -0.12
USP43Q70EL4 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC14.33□□□□□ -0.12
USP43Q70EL4 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC14.33□□□□□ -0.12
USP43Q70EL4 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC14.33□□□□□ -0.12
USP43Q70EL4 AC006557.2-201ENST00000592985 1240 ntBASIC14.33□□□□□ -0.12
USP43Q70EL4 AL139424.1-201ENST00000607572 797 ntBASIC14.33□□□□□ -0.12
USP43Q70EL4 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC14.33□□□□□ -0.12
USP43Q70EL4 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC14.33□□□□□ -0.12
USP43Q70EL4 MIR1199-201ENST00000621445 119 ntBASIC14.33□□□□□ -0.12
USP43Q70EL4 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC14.33□□□□□ -0.12
USP43Q70EL4 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC14.33□□□□□ -0.12
USP43Q70EL4 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC14.33□□□□□ -0.12
USP43Q70EL4 AL022326.1-202ENST00000641533 845 ntBASIC14.33□□□□□ -0.12
USP43Q70EL4 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC14.33□□□□□ -0.12
USP43Q70EL4 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
USP43Q70EL4 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
USP43Q70EL4 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC14.33□□□□□ -0.12
USP43Q70EL4 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
USP43Q70EL4 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC14.33□□□□□ -0.12
USP43Q70EL4 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
USP43Q70EL4 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
USP43Q70EL4 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
USP43Q70EL4 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC14.33□□□□□ -0.12
USP43Q70EL4 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
USP43Q70EL4 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
USP43Q70EL4 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
USP43Q70EL4 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
USP43Q70EL4 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC14.32□□□□□ -0.12
USP43Q70EL4 AC138969.2-201ENST00000532739 9932 ntBASIC14.32□□□□□ -0.12
USP43Q70EL4 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
USP43Q70EL4 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
USP43Q70EL4 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC14.32□□□□□ -0.12
USP43Q70EL4 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
USP43Q70EL4 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
USP43Q70EL4 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC14.32□□□□□ -0.12
USP43Q70EL4 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
USP43Q70EL4 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
USP43Q70EL4 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC14.32□□□□□ -0.12
USP43Q70EL4 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
USP43Q70EL4 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
USP43Q70EL4 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC14.32□□□□□ -0.12
USP43Q70EL4 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
USP43Q70EL4 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC14.32□□□□□ -0.12
USP43Q70EL4 PRYP5-201ENST00000451909 266 ntBASIC14.32□□□□□ -0.12
USP43Q70EL4 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC14.32□□□□□ -0.12
USP43Q70EL4 ETFA-208ENST00000559602 792 ntTSL 3 BASIC14.32□□□□□ -0.12
USP43Q70EL4 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
USP43Q70EL4 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC14.32□□□□□ -0.12
USP43Q70EL4 AL353135.1-201ENST00000606729 504 ntBASIC14.32□□□□□ -0.12
USP43Q70EL4 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC14.32□□□□□ -0.12
USP43Q70EL4 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC14.32□□□□□ -0.12
USP43Q70EL4 AC073592.4-201ENST00000623827 446 ntBASIC14.32□□□□□ -0.12
USP43Q70EL4 AP001350.2-201ENST00000625104 1094 ntBASIC14.32□□□□□ -0.12
USP43Q70EL4 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC14.32□□□□□ -0.12
USP43Q70EL4 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC14.32□□□□□ -0.12
USP43Q70EL4 AC087386.2-201ENST00000623212 4637 ntBASIC14.32□□□□□ -0.12
USP43Q70EL4 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC14.32□□□□□ -0.12
USP43Q70EL4 SLC22A20-204ENST00000530038 1673 ntBASIC14.32□□□□□ -0.12
USP43Q70EL4 GID4-202ENST00000376345 1391 ntTSL 3 BASIC14.32□□□□□ -0.12
USP43Q70EL4 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC14.32□□□□□ -0.12
USP43Q70EL4 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
USP43Q70EL4 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
USP43Q70EL4 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
USP43Q70EL4 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
USP43Q70EL4 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
USP43Q70EL4 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC14.32□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 92.5 ms