Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA3P55318 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC11.81□□□□□ -0.52
FOXA3P55318 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC11.81□□□□□ -0.52
FOXA3P55318 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA3P55318 PPP6R2-202ENST00000359139 4035 ntAPPRIS ALT2 TSL 2 BASIC11.81□□□□□ -0.52
FOXA3P55318 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA3P55318 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA3P55318 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
FOXA3P55318 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA3P55318 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA3P55318 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA3P55318 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA3P55318 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA3P55318 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC11.8□□□□□ -0.52
FOXA3P55318 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA3P55318 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA3P55318 ARHGAP45-202ENST00000539243 4184 ntAPPRIS ALT2 TSL 2 BASIC11.8□□□□□ -0.52
FOXA3P55318 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC11.8□□□□□ -0.52
FOXA3P55318 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA3P55318 ATP13A1-202ENST00000357324 3861 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA3P55318 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA3P55318 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA3P55318 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA3P55318 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC11.8□□□□□ -0.52
FOXA3P55318 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA3P55318 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA3P55318 DNM1-212ENST00000627543 4734 ntAPPRIS ALT1 TSL 5 BASIC11.8□□□□□ -0.52
FOXA3P55318 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA3P55318 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA3P55318 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC11.8□□□□□ -0.52
FOXA3P55318 GUK1-204ENST00000366721 689 ntTSL 3 BASIC11.8□□□□□ -0.52
FOXA3P55318 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA3P55318 RNU1-129P-201ENST00000384064 167 ntBASIC11.8□□□□□ -0.52
FOXA3P55318 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC11.8□□□□□ -0.52
FOXA3P55318 AP002469.2-201ENST00000531724 424 ntBASIC11.8□□□□□ -0.52
FOXA3P55318 MPI-205ENST00000562606 1052 ntTSL 3 BASIC11.8□□□□□ -0.52
FOXA3P55318 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC11.8□□□□□ -0.52
FOXA3P55318 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC11.8□□□□□ -0.52
FOXA3P55318 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC11.8□□□□□ -0.52
FOXA3P55318 U1.21-201ENST00000580816 167 ntBASIC11.8□□□□□ -0.52
FOXA3P55318 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
FOXA3P55318 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA3P55318 AL591684.3-201ENST00000605187 298 ntBASIC11.8□□□□□ -0.52
FOXA3P55318 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC11.8□□□□□ -0.52
FOXA3P55318 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC11.8□□□□□ -0.52
FOXA3P55318 CA12-201ENST00000178638 6413 ntAPPRIS P4 TSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA3P55318 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA3P55318 ACAN-209ENST00000617301 8669 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
FOXA3P55318 MGLL-201ENST00000265052 4642 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA3P55318 SLC20A2-208ENST00000520262 2992 ntAPPRIS P1 TSL 2 BASIC11.8□□□□□ -0.52
FOXA3P55318 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA3P55318 YIPF6-204ENST00000462683 6741 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA3P55318 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA3P55318 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA3P55318 FAM219A-203ENST00000379080 3591 ntTSL 2 BASIC11.8□□□□□ -0.52
FOXA3P55318 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA3P55318 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA3P55318 PEG13-201ENST00000631594 5667 ntBASIC11.8□□□□□ -0.52
FOXA3P55318 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC11.8□□□□□ -0.52
FOXA3P55318 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA3P55318 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA3P55318 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA3P55318 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA3P55318 AC007920.1-201ENST00000356133 2674 ntTSL 2 BASIC11.8□□□□□ -0.52
FOXA3P55318 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA3P55318 SMC5-201ENST00000361138 5980 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA3P55318 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC11.8□□□□□ -0.52
FOXA3P55318 MARS-201ENST00000262027 2905 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA3P55318 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA3P55318 ZNF747-202ENST00000395094 3504 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
FOXA3P55318 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
FOXA3P55318 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC11.79□□□□□ -0.52
FOXA3P55318 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
FOXA3P55318 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC11.79□□□□□ -0.52
FOXA3P55318 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC11.79□□□□□ -0.52
FOXA3P55318 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
FOXA3P55318 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
FOXA3P55318 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC11.79□□□□□ -0.52
FOXA3P55318 MYADM-203ENST00000391769 3186 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
FOXA3P55318 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC11.79□□□□□ -0.52
FOXA3P55318 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
FOXA3P55318 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
FOXA3P55318 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC11.79□□□□□ -0.52
FOXA3P55318 SWAP70-201ENST00000318950 4882 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
FOXA3P55318 THTPA-201ENST00000288014 2860 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
FOXA3P55318 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC11.79□□□□□ -0.52
FOXA3P55318 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
FOXA3P55318 AC027601.5-201ENST00000624065 2482 ntBASIC11.79□□□□□ -0.52
FOXA3P55318 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC11.79□□□□□ -0.52
FOXA3P55318 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
FOXA3P55318 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
FOXA3P55318 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC11.79□□□□□ -0.52
FOXA3P55318 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
FOXA3P55318 GPT2-201ENST00000340124 3984 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
FOXA3P55318 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC11.79□□□□□ -0.52
FOXA3P55318 MED25-212ENST00000618715 1467 ntTSL 5 BASIC11.79□□□□□ -0.52
FOXA3P55318 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC11.79□□□□□ -0.52
FOXA3P55318 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
FOXA3P55318 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
FOXA3P55318 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms