Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
CDH6P55285 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
CDH6P55285 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
CDH6P55285 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC16.27■□□□□ 0.19
CDH6P55285 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
CDH6P55285 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CDH6P55285 AC006058.4-201ENST00000624016 1670 ntBASIC16.27■□□□□ 0.19
CDH6P55285 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
CDH6P55285 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC16.27■□□□□ 0.19
CDH6P55285 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC16.27■□□□□ 0.19
CDH6P55285 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC16.26■□□□□ 0.19
CDH6P55285 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
CDH6P55285 STRN-202ENST00000379213 2254 ntTSL 5 BASIC16.26■□□□□ 0.19
CDH6P55285 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CDH6P55285 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CDH6P55285 AC084364.1-201ENST00000551967 1556 ntBASIC16.26■□□□□ 0.19
CDH6P55285 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC16.26■□□□□ 0.19
CDH6P55285 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CDH6P55285 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
CDH6P55285 MECR-202ENST00000373791 2416 ntTSL 2 BASIC16.26■□□□□ 0.19
CDH6P55285 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
CDH6P55285 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC16.26■□□□□ 0.19
CDH6P55285 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CDH6P55285 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CDH6P55285 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CDH6P55285 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC16.26■□□□□ 0.19
CDH6P55285 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CDH6P55285 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
CDH6P55285 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CDH6P55285 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC16.26■□□□□ 0.19
CDH6P55285 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC16.26■□□□□ 0.19
CDH6P55285 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC16.26■□□□□ 0.19
CDH6P55285 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CDH6P55285 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC16.26■□□□□ 0.19
CDH6P55285 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CDH6P55285 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
CDH6P55285 AC097493.3-201ENST00000509725 367 ntBASIC16.26■□□□□ 0.19
CDH6P55285 LY6E-204ENST00000519546 971 ntTSL 2 BASIC16.26■□□□□ 0.19
CDH6P55285 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC16.26■□□□□ 0.19
CDH6P55285 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC16.26■□□□□ 0.19
CDH6P55285 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC16.26■□□□□ 0.19
CDH6P55285 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC16.26■□□□□ 0.19
CDH6P55285 LINC01115-203ENST00000606068 577 ntBASIC16.26■□□□□ 0.19
CDH6P55285 AF228730.6-201ENST00000641497 218 ntBASIC16.26■□□□□ 0.19
CDH6P55285 AC084121.3-201ENST00000641716 218 ntBASIC16.26■□□□□ 0.19
CDH6P55285 AL109936.8-201ENST00000641772 604 ntBASIC16.26■□□□□ 0.19
CDH6P55285 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC16.26■□□□□ 0.19
CDH6P55285 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
CDH6P55285 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC16.26■□□□□ 0.19
CDH6P55285 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
CDH6P55285 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CDH6P55285 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CDH6P55285 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
CDH6P55285 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC16.26■□□□□ 0.19
CDH6P55285 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC16.26■□□□□ 0.19
CDH6P55285 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
CDH6P55285 AMT-224ENST00000635808 1610 ntTSL 5 BASIC16.26■□□□□ 0.19
CDH6P55285 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CDH6P55285 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC16.26■□□□□ 0.19
CDH6P55285 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.19
CDH6P55285 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CDH6P55285 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
CDH6P55285 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CDH6P55285 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
CDH6P55285 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CDH6P55285 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CDH6P55285 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CDH6P55285 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CDH6P55285 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CDH6P55285 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CDH6P55285 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC16.25■□□□□ 0.19
CDH6P55285 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CDH6P55285 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC16.25■□□□□ 0.19
CDH6P55285 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CDH6P55285 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CDH6P55285 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
CDH6P55285 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CDH6P55285 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CDH6P55285 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC16.25■□□□□ 0.19
CDH6P55285 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
CDH6P55285 HLA-DRB6-201ENST00000411500 1235 ntBASIC16.25■□□□□ 0.19
CDH6P55285 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC16.25■□□□□ 0.19
CDH6P55285 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC16.25■□□□□ 0.19
CDH6P55285 MPI-209ENST00000564003 1195 ntTSL 2 BASIC16.25■□□□□ 0.19
CDH6P55285 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC16.25■□□□□ 0.19
CDH6P55285 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC16.25■□□□□ 0.19
CDH6P55285 AC074044.1-201ENST00000609673 707 ntBASIC16.25■□□□□ 0.19
CDH6P55285 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC16.25■□□□□ 0.19
CDH6P55285 RAB34-223ENST00000636154 730 ntTSL 2 BASIC16.25■□□□□ 0.19
CDH6P55285 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CDH6P55285 TNRC18P2-201ENST00000417666 2714 ntBASIC16.25■□□□□ 0.19
CDH6P55285 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC16.25■□□□□ 0.19
CDH6P55285 MST1L-201ENST00000442552 2185 ntBASIC16.25■□□□□ 0.19
CDH6P55285 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
CDH6P55285 AC023024.2-201ENST00000623561 1993 ntBASIC16.25■□□□□ 0.19
CDH6P55285 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
CDH6P55285 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CDH6P55285 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CDH6P55285 DEK-201ENST00000244776 1441 ntTSL 2 BASIC16.25■□□□□ 0.19
CDH6P55285 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 1197.6 ms