Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC16.22■□□□□ 0.19
EPHB3P54753 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
EPHB3P54753 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC16.22■□□□□ 0.19
EPHB3P54753 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC16.22■□□□□ 0.19
EPHB3P54753 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
EPHB3P54753 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC16.22■□□□□ 0.19
EPHB3P54753 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC16.22■□□□□ 0.19
EPHB3P54753 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
EPHB3P54753 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
EPHB3P54753 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
EPHB3P54753 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
EPHB3P54753 MIR1908-201ENST00000410394 80 ntBASIC16.22■□□□□ 0.19
EPHB3P54753 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
EPHB3P54753 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC16.22■□□□□ 0.19
EPHB3P54753 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC16.22■□□□□ 0.19
EPHB3P54753 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
EPHB3P54753 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
EPHB3P54753 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC16.22■□□□□ 0.19
EPHB3P54753 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC16.22■□□□□ 0.19
EPHB3P54753 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC16.22■□□□□ 0.19
EPHB3P54753 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC16.22■□□□□ 0.19
EPHB3P54753 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC16.22■□□□□ 0.19
EPHB3P54753 AC008687.7-202ENST00000637404 953 ntBASIC16.22■□□□□ 0.19
EPHB3P54753 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
EPHB3P54753 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
EPHB3P54753 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
EPHB3P54753 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
EPHB3P54753 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
EPHB3P54753 LOX-206ENST00000639739 1626 ntTSL 5 BASIC16.22■□□□□ 0.19
EPHB3P54753 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
EPHB3P54753 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC16.22■□□□□ 0.19
EPHB3P54753 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
EPHB3P54753 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
EPHB3P54753 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
EPHB3P54753 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC16.22■□□□□ 0.19
EPHB3P54753 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC16.22■□□□□ 0.19
EPHB3P54753 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
EPHB3P54753 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC16.22■□□□□ 0.19
EPHB3P54753 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
EPHB3P54753 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
EPHB3P54753 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
EPHB3P54753 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
EPHB3P54753 AC024909.3-201ENST00000611513 2257 ntBASIC16.21■□□□□ 0.19
EPHB3P54753 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC16.21■□□□□ 0.19
EPHB3P54753 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC16.21■□□□□ 0.19
EPHB3P54753 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC16.21■□□□□ 0.19
EPHB3P54753 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
EPHB3P54753 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
EPHB3P54753 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
EPHB3P54753 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
EPHB3P54753 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
EPHB3P54753 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC16.21■□□□□ 0.19
EPHB3P54753 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC16.21■□□□□ 0.19
EPHB3P54753 KLF2P2-201ENST00000416807 1039 ntBASIC16.21■□□□□ 0.19
EPHB3P54753 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC16.21■□□□□ 0.19
EPHB3P54753 AC004066.1-201ENST00000502488 802 ntBASIC16.21■□□□□ 0.19
EPHB3P54753 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
EPHB3P54753 FAM8A2P-201ENST00000528813 1142 ntBASIC16.21■□□□□ 0.19
EPHB3P54753 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC16.21■□□□□ 0.19
EPHB3P54753 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
EPHB3P54753 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
EPHB3P54753 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
EPHB3P54753 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC16.21■□□□□ 0.19
EPHB3P54753 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
EPHB3P54753 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
EPHB3P54753 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC16.21■□□□□ 0.19
EPHB3P54753 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
EPHB3P54753 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC16.21■□□□□ 0.18
EPHB3P54753 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
EPHB3P54753 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
EPHB3P54753 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
EPHB3P54753 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.18
EPHB3P54753 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
EPHB3P54753 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC16.2■□□□□ 0.18
EPHB3P54753 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC16.2■□□□□ 0.18
EPHB3P54753 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
EPHB3P54753 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC16.2■□□□□ 0.18
EPHB3P54753 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC16.2■□□□□ 0.18
EPHB3P54753 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
EPHB3P54753 AMT-224ENST00000635808 1610 ntTSL 5 BASIC16.2■□□□□ 0.18
EPHB3P54753 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
EPHB3P54753 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
EPHB3P54753 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC16.2■□□□□ 0.18
EPHB3P54753 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
EPHB3P54753 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
EPHB3P54753 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC16.2■□□□□ 0.18
EPHB3P54753 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC16.2■□□□□ 0.18
EPHB3P54753 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC16.2■□□□□ 0.18
EPHB3P54753 FAM197Y7-201ENST00000432892 766 ntBASIC16.2■□□□□ 0.18
EPHB3P54753 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
EPHB3P54753 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
EPHB3P54753 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
EPHB3P54753 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC16.2■□□□□ 0.18
EPHB3P54753 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
EPHB3P54753 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
EPHB3P54753 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
EPHB3P54753 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC16.2■□□□□ 0.18
EPHB3P54753 DUX4L45-201ENST00000566406 1057 ntBASIC16.2■□□□□ 0.18
EPHB3P54753 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC16.2■□□□□ 0.18
EPHB3P54753 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 86.4 ms