Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 RN7SL67P-201ENST00000492147 296 ntBASIC20.03■□□□□ 0.8
COL18A1P39060 ALG3P1-201ENST00000508806 1114 ntBASIC20.03■□□□□ 0.8
COL18A1P39060 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC20.03■□□□□ 0.8
COL18A1P39060 MIR4750-201ENST00000584564 56 ntBASIC20.03■□□□□ 0.8
COL18A1P39060 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC20.03■□□□□ 0.8
COL18A1P39060 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC20.03■□□□□ 0.8
COL18A1P39060 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC20.03■□□□□ 0.8
COL18A1P39060 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL18A1P39060 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC20.03■□□□□ 0.8
COL18A1P39060 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
COL18A1P39060 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL18A1P39060 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC20.03■□□□□ 0.8
COL18A1P39060 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL18A1P39060 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
COL18A1P39060 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL18A1P39060 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL18A1P39060 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC20.03■□□□□ 0.8
COL18A1P39060 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC20.03■□□□□ 0.8
COL18A1P39060 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC20.03■□□□□ 0.8
COL18A1P39060 AC105389.3-201ENST00000508038 907 ntTSL 5 BASIC20.03■□□□□ 0.8
COL18A1P39060 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC20.03■□□□□ 0.8
COL18A1P39060 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC20.03■□□□□ 0.8
COL18A1P39060 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC20.03■□□□□ 0.8
COL18A1P39060 RPL17P45-201ENST00000586289 509 ntBASIC20.03■□□□□ 0.8
COL18A1P39060 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC20.03■□□□□ 0.8
COL18A1P39060 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC20.03■□□□□ 0.8
COL18A1P39060 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC20.03■□□□□ 0.8
COL18A1P39060 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC20.03■□□□□ 0.8
COL18A1P39060 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC20.03■□□□□ 0.8
COL18A1P39060 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC20.03■□□□□ 0.8
COL18A1P39060 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC20.03■□□□□ 0.8
COL18A1P39060 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC20.02■□□□□ 0.8
COL18A1P39060 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL18A1P39060 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC20.02■□□□□ 0.8
COL18A1P39060 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
COL18A1P39060 AL360270.3-201ENST00000609118 1348 ntBASIC20.02■□□□□ 0.8
COL18A1P39060 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
COL18A1P39060 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL18A1P39060 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
COL18A1P39060 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
COL18A1P39060 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
COL18A1P39060 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
COL18A1P39060 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
COL18A1P39060 NKILA-202ENST00000614771 2598 ntBASIC20.02■□□□□ 0.8
COL18A1P39060 AMT-239ENST00000636865 1914 ntTSL 5 BASIC20.02■□□□□ 0.8
COL18A1P39060 OR2K2-202ENST00000374428 1038 ntBASIC20.02■□□□□ 0.8
COL18A1P39060 AC145207.1-201ENST00000415556 691 ntTSL 4 BASIC20.02■□□□□ 0.8
COL18A1P39060 AC078875.1-201ENST00000431907 724 ntBASIC20.02■□□□□ 0.8
COL18A1P39060 AL365295.1-203ENST00000435322 566 ntTSL 4 BASIC20.02■□□□□ 0.8
COL18A1P39060 AL157407.1-201ENST00000435784 904 ntBASIC20.02■□□□□ 0.8
COL18A1P39060 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC20.02■□□□□ 0.8
COL18A1P39060 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC20.02■□□□□ 0.8
COL18A1P39060 AIPL1-211ENST00000576776 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL18A1P39060 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC20.02■□□□□ 0.8
COL18A1P39060 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL18A1P39060 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL18A1P39060 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL18A1P39060 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
COL18A1P39060 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL18A1P39060 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC20.02■□□□□ 0.79
COL18A1P39060 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
COL18A1P39060 AC092127.1-201ENST00000567093 3455 ntBASIC20.02■□□□□ 0.79
COL18A1P39060 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
COL18A1P39060 CAP2P1-201ENST00000557743 1390 ntBASIC20.02■□□□□ 0.79
COL18A1P39060 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL18A1P39060 TBC1D3J-201ENST00000620719 1426 ntBASIC20.01■□□□□ 0.79
COL18A1P39060 SUPT20HL2-201ENST00000486479 2409 ntBASIC20.01■□□□□ 0.79
COL18A1P39060 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL18A1P39060 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL18A1P39060 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
COL18A1P39060 FAM58BP-201ENST00000439056 645 ntBASIC20.01■□□□□ 0.79
COL18A1P39060 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
COL18A1P39060 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
COL18A1P39060 CR589904.1-202ENST00000611154 660 ntTSL 5 BASIC20.01■□□□□ 0.79
COL18A1P39060 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC20.01■□□□□ 0.79
COL18A1P39060 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL18A1P39060 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL18A1P39060 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
COL18A1P39060 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL18A1P39060 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL18A1P39060 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
COL18A1P39060 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
COL18A1P39060 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC20.01■□□□□ 0.79
COL18A1P39060 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL18A1P39060 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC20.01■□□□□ 0.79
COL18A1P39060 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
COL18A1P39060 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC20.01■□□□□ 0.79
COL18A1P39060 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL18A1P39060 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC20■□□□□ 0.79
COL18A1P39060 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC20■□□□□ 0.79
COL18A1P39060 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC20■□□□□ 0.79
COL18A1P39060 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL18A1P39060 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
COL18A1P39060 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC20■□□□□ 0.79
COL18A1P39060 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
COL18A1P39060 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
COL18A1P39060 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC20■□□□□ 0.79
COL18A1P39060 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL18A1P39060 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC20■□□□□ 0.79
COL18A1P39060 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 58.6 ms