Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 LINC00634-202ENST00000505157 222 ntBASIC18.39■□□□□ 0.54
BRCA1P38398 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
BRCA1P38398 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC18.39■□□□□ 0.54
BRCA1P38398 NOP16-211ENST00000621444 954 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
BRCA1P38398 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC18.39■□□□□ 0.54
BRCA1P38398 HTR4-213ENST00000631296 1224 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
BRCA1P38398 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.54
BRCA1P38398 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC18.39■□□□□ 0.54
BRCA1P38398 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
BRCA1P38398 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
BRCA1P38398 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
BRCA1P38398 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC18.39■□□□□ 0.53
BRCA1P38398 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
BRCA1P38398 EDNRB-204ENST00000626030 1571 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
BRCA1P38398 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
BRCA1P38398 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC18.39■□□□□ 0.53
BRCA1P38398 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC18.39■□□□□ 0.53
BRCA1P38398 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
BRCA1P38398 AC007613.1-201ENST00000572811 2597 ntBASIC18.39■□□□□ 0.53
BRCA1P38398 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC18.39■□□□□ 0.53
BRCA1P38398 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
BRCA1P38398 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC18.39■□□□□ 0.53
BRCA1P38398 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
BRCA1P38398 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
BRCA1P38398 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
BRCA1P38398 HBB-201ENST00000335295 628 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
BRCA1P38398 COX20P1-201ENST00000366529 357 ntBASIC18.39■□□□□ 0.53
BRCA1P38398 IGF1-205ENST00000424202 612 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
BRCA1P38398 AC026320.2-201ENST00000434379 478 ntBASIC18.39■□□□□ 0.53
BRCA1P38398 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
BRCA1P38398 SNHG17-208ENST00000456953 546 ntTSL 3 BASIC18.39■□□□□ 0.53
BRCA1P38398 APOPT1-209ENST00000492189 513 ntTSL 3 BASIC18.39■□□□□ 0.53
BRCA1P38398 AC011247.3-201ENST00000603297 438 ntBASIC18.39■□□□□ 0.53
BRCA1P38398 AC087392.5-201ENST00000612517 489 ntBASIC18.39■□□□□ 0.53
BRCA1P38398 ETV2-207ENST00000619399 994 ntTSL 5 BASIC18.39■□□□□ 0.53
BRCA1P38398 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC18.39■□□□□ 0.53
BRCA1P38398 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
BRCA1P38398 LINC01815-202ENST00000641468 1409 ntBASIC18.39■□□□□ 0.53
BRCA1P38398 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
BRCA1P38398 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
BRCA1P38398 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
BRCA1P38398 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC18.39■□□□□ 0.53
BRCA1P38398 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC18.39■□□□□ 0.53
BRCA1P38398 REXO1L5P-201ENST00000622260 2098 ntBASIC18.38■□□□□ 0.53
BRCA1P38398 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
BRCA1P38398 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
BRCA1P38398 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
BRCA1P38398 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
BRCA1P38398 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
BRCA1P38398 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
BRCA1P38398 MAPK3-204ENST00000395200 997 ntTSL 3 BASIC18.38■□□□□ 0.53
BRCA1P38398 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC18.38■□□□□ 0.53
BRCA1P38398 SP100-205ENST00000409824 1802 ntTSL 5 BASIC18.38■□□□□ 0.53
BRCA1P38398 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
BRCA1P38398 AC069208.1-205ENST00000456299 576 ntTSL 4 BASIC18.38■□□□□ 0.53
BRCA1P38398 AC012213.1-201ENST00000517376 722 ntTSL 3 BASIC18.38■□□□□ 0.53
BRCA1P38398 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC18.38■□□□□ 0.53
BRCA1P38398 INCA1-203ENST00000575780 1221 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
BRCA1P38398 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
BRCA1P38398 DDX5-235ENST00000630471 473 ntTSL 4 BASIC18.38■□□□□ 0.53
BRCA1P38398 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
BRCA1P38398 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
BRCA1P38398 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
BRCA1P38398 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
BRCA1P38398 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
BRCA1P38398 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
BRCA1P38398 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
BRCA1P38398 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
BRCA1P38398 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
BRCA1P38398 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC18.37■□□□□ 0.53
BRCA1P38398 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
BRCA1P38398 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
BRCA1P38398 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
BRCA1P38398 MBP-201ENST00000354542 575 ntTSL 2 BASIC18.37■□□□□ 0.53
BRCA1P38398 BGLAP-201ENST00000368272 732 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
BRCA1P38398 CNRIP1-202ENST00000409559 644 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
BRCA1P38398 AL807761.2-201ENST00000422849 729 ntBASIC18.37■□□□□ 0.53
BRCA1P38398 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC18.37■□□□□ 0.53
BRCA1P38398 RN7SL396P-201ENST00000471086 295 ntBASIC18.37■□□□□ 0.53
BRCA1P38398 CCNC-217ENST00000523985 958 ntTSL 2 BASIC18.37■□□□□ 0.53
BRCA1P38398 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
BRCA1P38398 AC012645.2-201ENST00000566190 553 ntTSL 4 BASIC18.37■□□□□ 0.53
BRCA1P38398 AC011481.2-201ENST00000585408 426 ntTSL 3 BASIC18.37■□□□□ 0.53
BRCA1P38398 HKR1-225ENST00000592168 566 ntTSL 4 BASIC18.37■□□□□ 0.53
BRCA1P38398 MYOZ3-209ENST00000615557 1031 ntTSL 2 BASIC18.37■□□□□ 0.53
BRCA1P38398 AC092299.1-201ENST00000632679 757 ntBASIC18.37■□□□□ 0.53
BRCA1P38398 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
BRCA1P38398 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC18.37■□□□□ 0.53
BRCA1P38398 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
BRCA1P38398 STK26-204ENST00000481105 1835 ntTSL 2 BASIC18.37■□□□□ 0.53
BRCA1P38398 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
BRCA1P38398 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
BRCA1P38398 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
BRCA1P38398 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
BRCA1P38398 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
BRCA1P38398 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
BRCA1P38398 SERPINB9P1-202ENST00000545177 1375 ntTSL 3 BASIC18.37■□□□□ 0.53
BRCA1P38398 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
BRCA1P38398 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC18.37■□□□□ 0.53
BRCA1P38398 AL606748.1-201ENST00000423919 655 ntTSL 3 BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms