Protein–RNA interactions for Protein: P28288

ABCD3, ATP-binding cassette sub-family D member 3, humanhuman

Predictions only

Length 659 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCD3P28288 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
ABCD3P28288 FAM86LP-201ENST00000478302 853 ntBASIC14.39□□□□□ -0.11
ABCD3P28288 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC14.39□□□□□ -0.11
ABCD3P28288 SPDYE22P-201ENST00000582158 798 ntBASIC14.39□□□□□ -0.11
ABCD3P28288 CHCHD2P3-201ENST00000603038 451 ntBASIC14.39□□□□□ -0.11
ABCD3P28288 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC14.39□□□□□ -0.11
ABCD3P28288 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
ABCD3P28288 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC14.39□□□□□ -0.11
ABCD3P28288 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
ABCD3P28288 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC14.39□□□□□ -0.11
ABCD3P28288 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC14.39□□□□□ -0.11
ABCD3P28288 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
ABCD3P28288 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
ABCD3P28288 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
ABCD3P28288 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
ABCD3P28288 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
ABCD3P28288 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
ABCD3P28288 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
ABCD3P28288 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
ABCD3P28288 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC14.39□□□□□ -0.11
ABCD3P28288 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
ABCD3P28288 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
ABCD3P28288 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC14.39□□□□□ -0.11
ABCD3P28288 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
ABCD3P28288 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC14.38□□□□□ -0.11
ABCD3P28288 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ABCD3P28288 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
ABCD3P28288 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC14.38□□□□□ -0.11
ABCD3P28288 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ABCD3P28288 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC14.38□□□□□ -0.11
ABCD3P28288 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
ABCD3P28288 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ABCD3P28288 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
ABCD3P28288 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC14.38□□□□□ -0.11
ABCD3P28288 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
ABCD3P28288 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ABCD3P28288 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
ABCD3P28288 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC14.38□□□□□ -0.11
ABCD3P28288 AC087481.3-201ENST00000602886 1894 ntBASIC14.38□□□□□ -0.11
ABCD3P28288 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
ABCD3P28288 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ABCD3P28288 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ABCD3P28288 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
ABCD3P28288 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC14.38□□□□□ -0.11
ABCD3P28288 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
ABCD3P28288 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC14.38□□□□□ -0.11
ABCD3P28288 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ABCD3P28288 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
ABCD3P28288 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ABCD3P28288 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC14.38□□□□□ -0.11
ABCD3P28288 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC14.38□□□□□ -0.11
ABCD3P28288 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC14.38□□□□□ -0.11
ABCD3P28288 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC14.38□□□□□ -0.11
ABCD3P28288 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC14.38□□□□□ -0.11
ABCD3P28288 AC123567.1-201ENST00000548294 1261 ntBASIC14.38□□□□□ -0.11
ABCD3P28288 AC140912.1-201ENST00000577171 1054 ntBASIC14.38□□□□□ -0.11
ABCD3P28288 UBL5-208ENST00000593087 320 ntTSL 3 BASIC14.38□□□□□ -0.11
ABCD3P28288 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC14.38□□□□□ -0.11
ABCD3P28288 AL662799.1-202ENST00000614205 422 ntBASIC14.38□□□□□ -0.11
ABCD3P28288 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
ABCD3P28288 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ABCD3P28288 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC14.38□□□□□ -0.11
ABCD3P28288 AC007431.3-201ENST00000623221 587 ntBASIC14.38□□□□□ -0.11
ABCD3P28288 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ABCD3P28288 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ABCD3P28288 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC14.38□□□□□ -0.11
ABCD3P28288 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ABCD3P28288 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ABCD3P28288 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC14.38□□□□□ -0.11
ABCD3P28288 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ABCD3P28288 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
ABCD3P28288 AC084364.1-201ENST00000551967 1556 ntBASIC14.38□□□□□ -0.11
ABCD3P28288 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ABCD3P28288 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ABCD3P28288 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
ABCD3P28288 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
ABCD3P28288 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
ABCD3P28288 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC14.38□□□□□ -0.11
ABCD3P28288 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
ABCD3P28288 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC14.37□□□□□ -0.11
ABCD3P28288 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
ABCD3P28288 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
ABCD3P28288 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
ABCD3P28288 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
ABCD3P28288 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
ABCD3P28288 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
ABCD3P28288 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC14.37□□□□□ -0.11
ABCD3P28288 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ABCD3P28288 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ABCD3P28288 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
ABCD3P28288 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC14.37□□□□□ -0.11
ABCD3P28288 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
ABCD3P28288 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ABCD3P28288 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
ABCD3P28288 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ABCD3P28288 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
ABCD3P28288 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ABCD3P28288 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ABCD3P28288 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC14.37□□□□□ -0.11
ABCD3P28288 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC14.37□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 64.9 ms