Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC14.09□□□□□ -0.15
SPTA1P02549 GAPDHP40-201ENST00000505218 1006 ntBASIC14.09□□□□□ -0.15
SPTA1P02549 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SPTA1P02549 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC14.09□□□□□ -0.15
SPTA1P02549 AL356417.2-202ENST00000608986 532 ntTSL 3 BASIC14.09□□□□□ -0.15
SPTA1P02549 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SPTA1P02549 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SPTA1P02549 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SPTA1P02549 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SPTA1P02549 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
SPTA1P02549 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SPTA1P02549 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC14.09□□□□□ -0.15
SPTA1P02549 AL138799.1-201ENST00000448213 1675 ntBASIC14.09□□□□□ -0.15
SPTA1P02549 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SPTA1P02549 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC14.09□□□□□ -0.15
SPTA1P02549 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SPTA1P02549 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SPTA1P02549 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SPTA1P02549 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SPTA1P02549 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SPTA1P02549 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SPTA1P02549 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
SPTA1P02549 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SPTA1P02549 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SPTA1P02549 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SPTA1P02549 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC14.09□□□□□ -0.15
SPTA1P02549 AL008707.1-201ENST00000422498 534 ntBASIC14.09□□□□□ -0.15
SPTA1P02549 PFN2-202ENST00000423691 911 ntTSL 2 BASIC14.09□□□□□ -0.15
SPTA1P02549 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC14.09□□□□□ -0.15
SPTA1P02549 C3orf38-204ENST00000486971 1259 ntTSL 2 BASIC14.09□□□□□ -0.15
SPTA1P02549 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC14.09□□□□□ -0.15
SPTA1P02549 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC14.09□□□□□ -0.15
SPTA1P02549 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC14.09□□□□□ -0.15
SPTA1P02549 LINC01629-201ENST00000553613 581 ntTSL 4 BASIC14.09□□□□□ -0.15
SPTA1P02549 CENPX-208ENST00000584347 799 ntTSL 2 BASIC14.09□□□□□ -0.15
SPTA1P02549 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
SPTA1P02549 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
SPTA1P02549 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
SPTA1P02549 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
SPTA1P02549 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC14.08□□□□□ -0.15
SPTA1P02549 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC14.08□□□□□ -0.15
SPTA1P02549 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
SPTA1P02549 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
SPTA1P02549 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
SPTA1P02549 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.15
SPTA1P02549 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC14.08□□□□□ -0.15
SPTA1P02549 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC14.08□□□□□ -0.16
SPTA1P02549 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
SPTA1P02549 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.16
SPTA1P02549 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SPTA1P02549 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SPTA1P02549 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.16
SPTA1P02549 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.16
SPTA1P02549 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
SPTA1P02549 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
SPTA1P02549 S100A2-203ENST00000368709 457 ntAPPRIS P1 TSL 3 BASIC14.08□□□□□ -0.16
SPTA1P02549 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
SPTA1P02549 RPSAP31-201ENST00000416648 895 ntBASIC14.08□□□□□ -0.16
SPTA1P02549 AC068134.1-201ENST00000441266 481 ntTSL 3 BASIC14.08□□□□□ -0.16
SPTA1P02549 AL596276.2-201ENST00000447525 331 ntBASIC14.08□□□□□ -0.16
SPTA1P02549 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
SPTA1P02549 LY6E-208ENST00000520531 490 ntTSL 2 BASIC14.08□□□□□ -0.16
SPTA1P02549 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC14.08□□□□□ -0.16
SPTA1P02549 DGAT2L7P-201ENST00000602462 744 ntBASIC14.08□□□□□ -0.16
SPTA1P02549 AP003392.6-201ENST00000607709 325 ntBASIC14.08□□□□□ -0.16
SPTA1P02549 ETV2-208ENST00000621247 941 ntTSL 5 BASIC14.08□□□□□ -0.16
SPTA1P02549 AC022748.3-201ENST00000621828 275 ntBASIC14.08□□□□□ -0.16
SPTA1P02549 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
SPTA1P02549 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
SPTA1P02549 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SPTA1P02549 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SPTA1P02549 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SPTA1P02549 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
SPTA1P02549 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
SPTA1P02549 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC14.08□□□□□ -0.16
SPTA1P02549 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC14.08□□□□□ -0.16
SPTA1P02549 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
SPTA1P02549 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC14.08□□□□□ -0.16
SPTA1P02549 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
SPTA1P02549 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
SPTA1P02549 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
SPTA1P02549 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SPTA1P02549 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC14.08□□□□□ -0.16
SPTA1P02549 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SPTA1P02549 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SPTA1P02549 AGER-206ENST00000375070 1463 ntTSL 5 BASIC14.08□□□□□ -0.16
SPTA1P02549 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
SPTA1P02549 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
SPTA1P02549 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SPTA1P02549 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC14.07□□□□□ -0.16
SPTA1P02549 DEF8-202ENST00000418391 852 ntTSL 2 BASIC14.07□□□□□ -0.16
SPTA1P02549 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC14.07□□□□□ -0.16
SPTA1P02549 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
SPTA1P02549 FTLP5-201ENST00000586853 534 ntBASIC14.07□□□□□ -0.16
SPTA1P02549 AP001527.2-201ENST00000614441 631 ntBASIC14.07□□□□□ -0.16
SPTA1P02549 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
SPTA1P02549 PLS3-210ENST00000626746 216 ntTSL 4 BASIC14.07□□□□□ -0.16
SPTA1P02549 AL805961.1-201ENST00000642026 753 ntBASIC14.07□□□□□ -0.16
SPTA1P02549 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
SPTA1P02549 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms