Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
LDLRP01130 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
LDLRP01130 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LDLRP01130 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
LDLRP01130 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC15.2■□□□□ 0.02
LDLRP01130 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
LDLRP01130 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC15.2■□□□□ 0.02
LDLRP01130 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LDLRP01130 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LDLRP01130 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
LDLRP01130 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
LDLRP01130 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC15.19■□□□□ 0.02
LDLRP01130 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LDLRP01130 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC15.19■□□□□ 0.02
LDLRP01130 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC15.19■□□□□ 0.02
LDLRP01130 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC15.19■□□□□ 0.02
LDLRP01130 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
LDLRP01130 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC15.19■□□□□ 0.02
LDLRP01130 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
LDLRP01130 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
LDLRP01130 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
LDLRP01130 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC15.19■□□□□ 0.02
LDLRP01130 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
LDLRP01130 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LDLRP01130 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LDLRP01130 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
LDLRP01130 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LDLRP01130 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LDLRP01130 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LDLRP01130 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
LDLRP01130 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
LDLRP01130 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC15.19■□□□□ 0.02
LDLRP01130 NME2P1-201ENST00000426182 414 ntBASIC15.19■□□□□ 0.02
LDLRP01130 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC15.19■□□□□ 0.02
LDLRP01130 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC15.19■□□□□ 0.02
LDLRP01130 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC15.19■□□□□ 0.02
LDLRP01130 AL135744.1-201ENST00000565098 629 ntBASIC15.19■□□□□ 0.02
LDLRP01130 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC15.19■□□□□ 0.02
LDLRP01130 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC15.19■□□□□ 0.02
LDLRP01130 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC15.19■□□□□ 0.02
LDLRP01130 AC025048.6-201ENST00000634326 1161 ntBASIC15.19■□□□□ 0.02
LDLRP01130 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
LDLRP01130 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC15.19■□□□□ 0.02
LDLRP01130 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
LDLRP01130 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC15.19■□□□□ 0.02
LDLRP01130 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC15.19■□□□□ 0.02
LDLRP01130 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC15.19■□□□□ 0.02
LDLRP01130 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LDLRP01130 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
LDLRP01130 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
LDLRP01130 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LDLRP01130 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC15.19■□□□□ 0.02
LDLRP01130 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LDLRP01130 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LDLRP01130 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
LDLRP01130 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LDLRP01130 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC15.19■□□□□ 0.02
LDLRP01130 AC005089.1-201ENST00000619486 2241 ntBASIC15.19■□□□□ 0.02
LDLRP01130 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
LDLRP01130 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
LDLRP01130 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
LDLRP01130 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC15.18■□□□□ 0.02
LDLRP01130 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC15.18■□□□□ 0.02
LDLRP01130 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
LDLRP01130 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC15.18■□□□□ 0.02
LDLRP01130 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
LDLRP01130 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
LDLRP01130 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
LDLRP01130 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC15.18■□□□□ 0.02
LDLRP01130 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
LDLRP01130 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
LDLRP01130 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
LDLRP01130 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC15.18■□□□□ 0.02
LDLRP01130 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC15.18■□□□□ 0.02
LDLRP01130 SLC9A3P2-201ENST00000447821 2021 ntBASIC15.18■□□□□ 0.02
LDLRP01130 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
LDLRP01130 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
LDLRP01130 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
LDLRP01130 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
LDLRP01130 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
LDLRP01130 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
LDLRP01130 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC15.18■□□□□ 0.02
LDLRP01130 HAUS4P1-201ENST00000406739 1145 ntBASIC15.18■□□□□ 0.02
LDLRP01130 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC15.18■□□□□ 0.02
LDLRP01130 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC15.18■□□□□ 0.02
LDLRP01130 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC15.18■□□□□ 0.02
LDLRP01130 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
LDLRP01130 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
LDLRP01130 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC15.18■□□□□ 0.02
LDLRP01130 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC15.18■□□□□ 0.02
LDLRP01130 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC15.18■□□□□ 0.02
LDLRP01130 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
LDLRP01130 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
LDLRP01130 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
LDLRP01130 CICP23-201ENST00000605013 2741 ntBASIC15.18■□□□□ 0.02
LDLRP01130 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC15.18■□□□□ 0.02
LDLRP01130 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC15.18■□□□□ 0.02
LDLRP01130 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC15.18■□□□□ 0.02
LDLRP01130 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC15.18■□□□□ 0.02
LDLRP01130 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms