Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PDLIM1O00151 DNAJC3-AS1-201ENST00000499499 2908 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
PDLIM1O00151 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
PDLIM1O00151 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC14.98□□□□□ -0.01
PDLIM1O00151 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC14.98□□□□□ -0.01
PDLIM1O00151 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
PDLIM1O00151 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
PDLIM1O00151 ZNF519-206ENST00000589498 2117 ntTSL 2 BASIC14.98□□□□□ -0.01
PDLIM1O00151 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC14.98□□□□□ -0.01
PDLIM1O00151 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PDLIM1O00151 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
PDLIM1O00151 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PDLIM1O00151 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC14.97□□□□□ -0.01
PDLIM1O00151 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PDLIM1O00151 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PDLIM1O00151 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
PDLIM1O00151 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PDLIM1O00151 CARD10-203ENST00000406271 3127 ntTSL 2 BASIC14.97□□□□□ -0.01
PDLIM1O00151 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
PDLIM1O00151 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
PDLIM1O00151 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
PDLIM1O00151 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
PDLIM1O00151 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC14.97□□□□□ -0.01
PDLIM1O00151 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC14.97□□□□□ -0.01
PDLIM1O00151 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PDLIM1O00151 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
PDLIM1O00151 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
PDLIM1O00151 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PDLIM1O00151 BRSK2-207ENST00000528710 3528 ntTSL 2 BASIC14.97□□□□□ -0.01
PDLIM1O00151 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC14.97□□□□□ -0.01
PDLIM1O00151 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
PDLIM1O00151 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC14.97□□□□□ -0.01
PDLIM1O00151 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
PDLIM1O00151 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC14.97□□□□□ -0.01
PDLIM1O00151 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
PDLIM1O00151 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC14.97□□□□□ -0.01
PDLIM1O00151 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC14.97□□□□□ -0.01
PDLIM1O00151 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC14.97□□□□□ -0.01
PDLIM1O00151 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC14.97□□□□□ -0.01
PDLIM1O00151 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC14.97□□□□□ -0.01
PDLIM1O00151 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
PDLIM1O00151 AC005412.3-201ENST00000580309 715 ntBASIC14.97□□□□□ -0.01
PDLIM1O00151 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC14.97□□□□□ -0.01
PDLIM1O00151 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC14.97□□□□□ -0.01
PDLIM1O00151 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC14.97□□□□□ -0.01
PDLIM1O00151 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
PDLIM1O00151 SENP3-202ENST00000429205 2222 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
PDLIM1O00151 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC14.97□□□□□ -0.01
PDLIM1O00151 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
PDLIM1O00151 KRT8P44-201ENST00000441609 1350 ntBASIC14.97□□□□□ -0.01
PDLIM1O00151 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PDLIM1O00151 AC131902.2-201ENST00000566892 2172 ntBASIC14.97□□□□□ -0.01
PDLIM1O00151 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PDLIM1O00151 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
PDLIM1O00151 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
PDLIM1O00151 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
PDLIM1O00151 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC14.96□□□□□ -0.01
PDLIM1O00151 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PDLIM1O00151 AC129492.6-201ENST00000611383 1305 ntBASIC14.96□□□□□ -0.01
PDLIM1O00151 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
PDLIM1O00151 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PDLIM1O00151 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
PDLIM1O00151 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PDLIM1O00151 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PDLIM1O00151 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC14.96□□□□□ -0.01
PDLIM1O00151 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
PDLIM1O00151 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC14.96□□□□□ -0.01
PDLIM1O00151 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
PDLIM1O00151 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
PDLIM1O00151 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PDLIM1O00151 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
PDLIM1O00151 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC14.96□□□□□ -0.01
PDLIM1O00151 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PDLIM1O00151 BEX3-201ENST00000361298 921 ntTSL 2 BASIC14.96□□□□□ -0.01
PDLIM1O00151 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PDLIM1O00151 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
PDLIM1O00151 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
PDLIM1O00151 IMP4-203ENST00000409935 958 ntTSL 5 BASIC14.96□□□□□ -0.01
PDLIM1O00151 HNRNPA1P28-201ENST00000424481 961 ntBASIC14.96□□□□□ -0.01
PDLIM1O00151 RHOQP3-201ENST00000437982 621 ntBASIC14.96□□□□□ -0.01
PDLIM1O00151 FAM185BP-201ENST00000443595 716 ntBASIC14.96□□□□□ -0.01
PDLIM1O00151 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC14.96□□□□□ -0.01
PDLIM1O00151 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC14.96□□□□□ -0.01
PDLIM1O00151 NMU-202ENST00000505262 693 ntTSL 3 BASIC14.96□□□□□ -0.01
PDLIM1O00151 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC14.96□□□□□ -0.01
PDLIM1O00151 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC14.96□□□□□ -0.01
PDLIM1O00151 RNA5SP416-201ENST00000516838 111 ntBASIC14.96□□□□□ -0.01
PDLIM1O00151 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC14.96□□□□□ -0.01
PDLIM1O00151 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC14.96□□□□□ -0.01
PDLIM1O00151 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
PDLIM1O00151 AC096734.2-201ENST00000562054 433 ntBASIC14.96□□□□□ -0.01
PDLIM1O00151 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
PDLIM1O00151 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PDLIM1O00151 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PDLIM1O00151 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC14.96□□□□□ -0.01
PDLIM1O00151 AC068075.1-201ENST00000519714 1832 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
PDLIM1O00151 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC14.96□□□□□ -0.01
PDLIM1O00151 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
PDLIM1O00151 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
PDLIM1O00151 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC14.96□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms