Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC15.07■□□□□ 0
VMP1Q96GC9 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
VMP1Q96GC9 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
VMP1Q96GC9 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC15.07■□□□□ 0
VMP1Q96GC9 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
VMP1Q96GC9 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC15.06■□□□□ 0
VMP1Q96GC9 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
VMP1Q96GC9 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
VMP1Q96GC9 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
VMP1Q96GC9 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC15.06■□□□□ 0
VMP1Q96GC9 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC15.06■□□□□ 0
VMP1Q96GC9 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
VMP1Q96GC9 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
VMP1Q96GC9 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC15.06■□□□□ 0
VMP1Q96GC9 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC15.06■□□□□ 0
VMP1Q96GC9 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC15.06■□□□□ 0
VMP1Q96GC9 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
VMP1Q96GC9 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
VMP1Q96GC9 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
VMP1Q96GC9 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC15.06■□□□□ 0
VMP1Q96GC9 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
VMP1Q96GC9 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
VMP1Q96GC9 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC15.06■□□□□ 0
VMP1Q96GC9 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC15.06■□□□□ 0
VMP1Q96GC9 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
VMP1Q96GC9 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
VMP1Q96GC9 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC15.06■□□□□ 0
VMP1Q96GC9 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
VMP1Q96GC9 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
VMP1Q96GC9 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
VMP1Q96GC9 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
VMP1Q96GC9 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC15.06■□□□□ 0
VMP1Q96GC9 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC15.06■□□□□ 0
VMP1Q96GC9 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC15.06■□□□□ 0
VMP1Q96GC9 CENPM-205ENST00000404067 905 ntTSL 3 BASIC15.06■□□□□ 0
VMP1Q96GC9 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC15.06■□□□□ 0
VMP1Q96GC9 BASP1P1-201ENST00000430708 665 ntBASIC15.06■□□□□ 0
VMP1Q96GC9 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC15.06■□□□□ 0
VMP1Q96GC9 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC15.06■□□□□ 0
VMP1Q96GC9 AL139010.1-201ENST00000454878 894 ntBASIC15.06■□□□□ 0
VMP1Q96GC9 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC15.06■□□□□ 0
VMP1Q96GC9 HLA-V-204ENST00000476601 1289 ntBASIC15.06■□□□□ 0
VMP1Q96GC9 AC093214.1-201ENST00000511688 1107 ntBASIC15.06■□□□□ 0
VMP1Q96GC9 RNA5SP421-201ENST00000516864 134 ntBASIC15.06■□□□□ 0
VMP1Q96GC9 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC15.06■□□□□ 0
VMP1Q96GC9 BANF1P1-201ENST00000553684 263 ntBASIC15.06■□□□□ 0
VMP1Q96GC9 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC15.06■□□□□ 0
VMP1Q96GC9 CETN4P-206ENST00000642099 2168 ntBASIC15.06■□□□□ 0
VMP1Q96GC9 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
VMP1Q96GC9 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
VMP1Q96GC9 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC15.06■□□□□ 0
VMP1Q96GC9 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
VMP1Q96GC9 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC15.06■□□□□ 0
VMP1Q96GC9 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC15.06■□□□□ 0
VMP1Q96GC9 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
VMP1Q96GC9 WARS-232ENST00000556645 2508 ntTSL 5 BASIC15.06■□□□□ 0
VMP1Q96GC9 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
VMP1Q96GC9 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
VMP1Q96GC9 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC15.06■□□□□ 0
VMP1Q96GC9 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC15.06■□□□□ 0
VMP1Q96GC9 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
VMP1Q96GC9 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
VMP1Q96GC9 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC15.06■□□□□ 0
VMP1Q96GC9 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC15.06■□□□□ 0
VMP1Q96GC9 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
VMP1Q96GC9 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC15.06■□□□□ 0
VMP1Q96GC9 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC15.05■□□□□ 0
VMP1Q96GC9 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
VMP1Q96GC9 LINC00926-202ENST00000502027 2141 ntTSL 2 BASIC15.05■□□□□ 0
VMP1Q96GC9 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC15.05■□□□□ 0
VMP1Q96GC9 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
VMP1Q96GC9 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ 0
VMP1Q96GC9 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC15.05■□□□□ 0
VMP1Q96GC9 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ 0
VMP1Q96GC9 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC15.05■□□□□ 0
VMP1Q96GC9 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
VMP1Q96GC9 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
VMP1Q96GC9 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ 0
VMP1Q96GC9 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ 0
VMP1Q96GC9 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ 0
VMP1Q96GC9 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC15.05■□□□□ 0
VMP1Q96GC9 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC15.05■□□□□ -0
VMP1Q96GC9 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC15.05■□□□□ -0
VMP1Q96GC9 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC15.05■□□□□ -0
VMP1Q96GC9 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC15.05■□□□□ -0
VMP1Q96GC9 AC097493.3-201ENST00000509725 367 ntBASIC15.05■□□□□ -0
VMP1Q96GC9 PAM16-215ENST00000577031 548 ntTSL 4 BASIC15.05■□□□□ -0
VMP1Q96GC9 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC15.05■□□□□ -0
VMP1Q96GC9 AL589739.1-201ENST00000607720 493 ntBASIC15.05■□□□□ -0
VMP1Q96GC9 SPDYE12P-201ENST00000618416 771 ntBASIC15.05■□□□□ -0
VMP1Q96GC9 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC15.05■□□□□ -0
VMP1Q96GC9 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC15.05■□□□□ -0
VMP1Q96GC9 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC15.05■□□□□ -0
VMP1Q96GC9 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC15.05■□□□□ -0
VMP1Q96GC9 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC15.05■□□□□ -0
VMP1Q96GC9 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC15.05■□□□□ -0
VMP1Q96GC9 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
VMP1Q96GC9 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC15.05■□□□□ -0
VMP1Q96GC9 SP100-205ENST00000409824 1802 ntTSL 5 BASIC15.05■□□□□ -0
VMP1Q96GC9 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC15.05■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms