Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
BEST3Q8N1M1 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
BEST3Q8N1M1 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
BEST3Q8N1M1 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
BEST3Q8N1M1 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
BEST3Q8N1M1 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
BEST3Q8N1M1 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC14.56□□□□□ -0.08
BEST3Q8N1M1 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC14.56□□□□□ -0.08
BEST3Q8N1M1 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
BEST3Q8N1M1 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC14.56□□□□□ -0.08
BEST3Q8N1M1 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
BEST3Q8N1M1 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC14.56□□□□□ -0.08
BEST3Q8N1M1 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
BEST3Q8N1M1 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
BEST3Q8N1M1 PKIG-203ENST00000372887 769 ntTSL 3 BASIC14.56□□□□□ -0.08
BEST3Q8N1M1 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
BEST3Q8N1M1 PGF-202ENST00000405431 666 ntTSL 5 BASIC14.56□□□□□ -0.08
BEST3Q8N1M1 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC14.56□□□□□ -0.08
BEST3Q8N1M1 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC14.56□□□□□ -0.08
BEST3Q8N1M1 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC14.56□□□□□ -0.08
BEST3Q8N1M1 TTTY23B-201ENST00000442790 549 ntBASIC14.56□□□□□ -0.08
BEST3Q8N1M1 USP40-206ENST00000443711 628 ntTSL 2 BASIC14.56□□□□□ -0.08
BEST3Q8N1M1 GALT-202ENST00000450095 1280 ntTSL 2 BASIC14.56□□□□□ -0.08
BEST3Q8N1M1 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC14.56□□□□□ -0.08
BEST3Q8N1M1 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
BEST3Q8N1M1 SLED1-202ENST00000512051 380 ntBASIC14.56□□□□□ -0.08
BEST3Q8N1M1 NEU3-203ENST00000529024 581 ntTSL 3 BASIC14.56□□□□□ -0.08
BEST3Q8N1M1 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
BEST3Q8N1M1 AC092552.1-201ENST00000547243 906 ntBASIC14.56□□□□□ -0.08
BEST3Q8N1M1 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC14.56□□□□□ -0.08
BEST3Q8N1M1 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC14.56□□□□□ -0.08
BEST3Q8N1M1 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC14.56□□□□□ -0.08
BEST3Q8N1M1 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC14.56□□□□□ -0.08
BEST3Q8N1M1 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC14.56□□□□□ -0.08
BEST3Q8N1M1 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC14.56□□□□□ -0.08
BEST3Q8N1M1 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
BEST3Q8N1M1 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
BEST3Q8N1M1 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
BEST3Q8N1M1 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
BEST3Q8N1M1 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
BEST3Q8N1M1 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
BEST3Q8N1M1 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC14.56□□□□□ -0.08
BEST3Q8N1M1 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
BEST3Q8N1M1 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC14.56□□□□□ -0.08
BEST3Q8N1M1 MBP-202ENST00000355994 2772 ntTSL 5 BASIC14.56□□□□□ -0.08
BEST3Q8N1M1 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC14.56□□□□□ -0.08
BEST3Q8N1M1 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC14.56□□□□□ -0.08
BEST3Q8N1M1 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
BEST3Q8N1M1 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC14.56□□□□□ -0.08
BEST3Q8N1M1 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
BEST3Q8N1M1 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
BEST3Q8N1M1 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
BEST3Q8N1M1 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
BEST3Q8N1M1 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
BEST3Q8N1M1 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
BEST3Q8N1M1 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
BEST3Q8N1M1 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC14.55□□□□□ -0.08
BEST3Q8N1M1 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
BEST3Q8N1M1 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC14.55□□□□□ -0.08
BEST3Q8N1M1 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC14.55□□□□□ -0.08
BEST3Q8N1M1 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
BEST3Q8N1M1 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
BEST3Q8N1M1 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
BEST3Q8N1M1 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC14.55□□□□□ -0.08
BEST3Q8N1M1 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
BEST3Q8N1M1 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
BEST3Q8N1M1 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
BEST3Q8N1M1 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC14.55□□□□□ -0.08
BEST3Q8N1M1 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
BEST3Q8N1M1 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC14.55□□□□□ -0.08
BEST3Q8N1M1 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC14.55□□□□□ -0.08
BEST3Q8N1M1 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
BEST3Q8N1M1 AC136604.1-201ENST00000418535 575 ntBASIC14.55□□□□□ -0.08
BEST3Q8N1M1 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC14.55□□□□□ -0.08
BEST3Q8N1M1 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC14.55□□□□□ -0.08
BEST3Q8N1M1 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC14.55□□□□□ -0.08
BEST3Q8N1M1 GPR53P-205ENST00000457298 1084 ntBASIC14.55□□□□□ -0.08
BEST3Q8N1M1 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC14.55□□□□□ -0.08
BEST3Q8N1M1 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC14.55□□□□□ -0.08
BEST3Q8N1M1 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC14.55□□□□□ -0.08
BEST3Q8N1M1 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC14.55□□□□□ -0.08
BEST3Q8N1M1 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC14.55□□□□□ -0.08
BEST3Q8N1M1 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC14.55□□□□□ -0.08
BEST3Q8N1M1 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
BEST3Q8N1M1 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC14.55□□□□□ -0.08
BEST3Q8N1M1 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
BEST3Q8N1M1 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
BEST3Q8N1M1 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
BEST3Q8N1M1 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
BEST3Q8N1M1 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
BEST3Q8N1M1 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC14.55□□□□□ -0.08
BEST3Q8N1M1 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
BEST3Q8N1M1 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
BEST3Q8N1M1 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
BEST3Q8N1M1 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC14.55□□□□□ -0.08
BEST3Q8N1M1 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC14.55□□□□□ -0.08
BEST3Q8N1M1 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
BEST3Q8N1M1 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
BEST3Q8N1M1 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
BEST3Q8N1M1 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms