Protein–RNA interactions for Protein: Q7Z3Y7

KRT28, Keratin, type I cytoskeletal 28, humanhuman

Predictions only

Length 464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT28Q7Z3Y7 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
KRT28Q7Z3Y7 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
KRT28Q7Z3Y7 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
KRT28Q7Z3Y7 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
KRT28Q7Z3Y7 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
KRT28Q7Z3Y7 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC20.78■□□□□ 0.92
KRT28Q7Z3Y7 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
KRT28Q7Z3Y7 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
KRT28Q7Z3Y7 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
KRT28Q7Z3Y7 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
KRT28Q7Z3Y7 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
KRT28Q7Z3Y7 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
KRT28Q7Z3Y7 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
KRT28Q7Z3Y7 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
KRT28Q7Z3Y7 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
KRT28Q7Z3Y7 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC20.77■□□□□ 0.92
KRT28Q7Z3Y7 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC20.77■□□□□ 0.92
KRT28Q7Z3Y7 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
KRT28Q7Z3Y7 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC20.77■□□□□ 0.92
KRT28Q7Z3Y7 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC20.77■□□□□ 0.92
KRT28Q7Z3Y7 LBH-202ENST00000401506 485 ntTSL 3 BASIC20.77■□□□□ 0.92
KRT28Q7Z3Y7 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC20.77■□□□□ 0.92
KRT28Q7Z3Y7 AC116345.2-201ENST00000512837 523 ntBASIC20.77■□□□□ 0.92
KRT28Q7Z3Y7 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
KRT28Q7Z3Y7 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC20.77■□□□□ 0.92
KRT28Q7Z3Y7 AL160314.3-201ENST00000556041 767 ntBASIC20.77■□□□□ 0.92
KRT28Q7Z3Y7 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC20.77■□□□□ 0.92
KRT28Q7Z3Y7 WDR7-208ENST00000589935 544 ntTSL 4 BASIC20.77■□□□□ 0.92
KRT28Q7Z3Y7 AL358472.3-201ENST00000608147 415 ntBASIC20.77■□□□□ 0.92
KRT28Q7Z3Y7 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC20.77■□□□□ 0.92
KRT28Q7Z3Y7 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC20.77■□□□□ 0.92
KRT28Q7Z3Y7 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC20.77■□□□□ 0.92
KRT28Q7Z3Y7 CDK7-214ENST00000626796 358 ntTSL 5 BASIC20.77■□□□□ 0.92
KRT28Q7Z3Y7 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC20.77■□□□□ 0.92
KRT28Q7Z3Y7 AC006453.1-201ENST00000636037 1257 ntBASIC20.77■□□□□ 0.92
KRT28Q7Z3Y7 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.91
KRT28Q7Z3Y7 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
KRT28Q7Z3Y7 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
KRT28Q7Z3Y7 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.91
KRT28Q7Z3Y7 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC20.76■□□□□ 0.91
KRT28Q7Z3Y7 MVK-214ENST00000629016 1591 ntTSL 5 BASIC20.76■□□□□ 0.91
KRT28Q7Z3Y7 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
KRT28Q7Z3Y7 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
KRT28Q7Z3Y7 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
KRT28Q7Z3Y7 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
KRT28Q7Z3Y7 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
KRT28Q7Z3Y7 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC20.76■□□□□ 0.91
KRT28Q7Z3Y7 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
KRT28Q7Z3Y7 AGGF1P2-201ENST00000426656 2106 ntBASIC20.76■□□□□ 0.91
KRT28Q7Z3Y7 AC114501.1-201ENST00000445949 172 ntBASIC20.76■□□□□ 0.91
KRT28Q7Z3Y7 AL353637.1-201ENST00000451571 732 ntBASIC20.76■□□□□ 0.91
KRT28Q7Z3Y7 AC019193.1-201ENST00000506678 823 ntBASIC20.76■□□□□ 0.91
KRT28Q7Z3Y7 IGLV3-15-201ENST00000518356 244 ntBASIC20.76■□□□□ 0.91
KRT28Q7Z3Y7 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC20.76■□□□□ 0.91
KRT28Q7Z3Y7 RTN3P1-201ENST00000536295 711 ntBASIC20.76■□□□□ 0.91
KRT28Q7Z3Y7 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
KRT28Q7Z3Y7 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
KRT28Q7Z3Y7 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC20.76■□□□□ 0.91
KRT28Q7Z3Y7 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC20.76■□□□□ 0.91
KRT28Q7Z3Y7 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC20.76■□□□□ 0.91
KRT28Q7Z3Y7 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC20.76■□□□□ 0.91
KRT28Q7Z3Y7 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
KRT28Q7Z3Y7 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
KRT28Q7Z3Y7 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
KRT28Q7Z3Y7 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
KRT28Q7Z3Y7 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
KRT28Q7Z3Y7 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
KRT28Q7Z3Y7 AC084364.1-201ENST00000551967 1556 ntBASIC20.76■□□□□ 0.91
KRT28Q7Z3Y7 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
KRT28Q7Z3Y7 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC20.76■□□□□ 0.91
KRT28Q7Z3Y7 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
KRT28Q7Z3Y7 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC20.75■□□□□ 0.91
KRT28Q7Z3Y7 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
KRT28Q7Z3Y7 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
KRT28Q7Z3Y7 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC20.75■□□□□ 0.91
KRT28Q7Z3Y7 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC20.75■□□□□ 0.91
KRT28Q7Z3Y7 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC20.75■□□□□ 0.91
KRT28Q7Z3Y7 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC20.75■□□□□ 0.91
KRT28Q7Z3Y7 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
KRT28Q7Z3Y7 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
KRT28Q7Z3Y7 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
KRT28Q7Z3Y7 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
KRT28Q7Z3Y7 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
KRT28Q7Z3Y7 AC026316.1-201ENST00000398900 414 ntBASIC20.75■□□□□ 0.91
KRT28Q7Z3Y7 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
KRT28Q7Z3Y7 ISCA2P1-201ENST00000425548 448 ntBASIC20.75■□□□□ 0.91
KRT28Q7Z3Y7 AC098935.1-201ENST00000446057 611 ntBASIC20.75■□□□□ 0.91
KRT28Q7Z3Y7 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC20.75■□□□□ 0.91
KRT28Q7Z3Y7 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
KRT28Q7Z3Y7 SAXO2-207ENST00000566861 404 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
KRT28Q7Z3Y7 RN7SL736P-201ENST00000613111 269 ntBASIC20.75■□□□□ 0.91
KRT28Q7Z3Y7 AC103691.2-201ENST00000618824 433 ntBASIC20.75■□□□□ 0.91
KRT28Q7Z3Y7 AL645728.2-202ENST00000641679 227 ntBASIC20.75■□□□□ 0.91
KRT28Q7Z3Y7 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC20.75■□□□□ 0.91
KRT28Q7Z3Y7 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC20.75■□□□□ 0.91
KRT28Q7Z3Y7 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
KRT28Q7Z3Y7 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
KRT28Q7Z3Y7 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
KRT28Q7Z3Y7 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC20.75■□□□□ 0.91
KRT28Q7Z3Y7 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 74.9 ms