Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC13.08□□□□□ -0.31
PDLIM3Q53GG5 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC13.08□□□□□ -0.31
PDLIM3Q53GG5 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC13.08□□□□□ -0.31
PDLIM3Q53GG5 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC13.08□□□□□ -0.31
PDLIM3Q53GG5 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.31
PDLIM3Q53GG5 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.31
PDLIM3Q53GG5 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
PDLIM3Q53GG5 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
PDLIM3Q53GG5 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
PDLIM3Q53GG5 BID-213ENST00000615414 2236 ntTSL 5 BASIC13.08□□□□□ -0.32
PDLIM3Q53GG5 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC13.08□□□□□ -0.32
PDLIM3Q53GG5 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
PDLIM3Q53GG5 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC13.08□□□□□ -0.32
PDLIM3Q53GG5 GPSM2-202ENST00000406462 7433 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
PDLIM3Q53GG5 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC13.08□□□□□ -0.32
PDLIM3Q53GG5 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
PDLIM3Q53GG5 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
PDLIM3Q53GG5 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
PDLIM3Q53GG5 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
PDLIM3Q53GG5 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
PDLIM3Q53GG5 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
PDLIM3Q53GG5 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
PDLIM3Q53GG5 RNU1-129P-201ENST00000384064 167 ntBASIC13.08□□□□□ -0.32
PDLIM3Q53GG5 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
PDLIM3Q53GG5 AC004945.1-201ENST00000416738 983 ntBASIC13.08□□□□□ -0.32
PDLIM3Q53GG5 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC13.08□□□□□ -0.32
PDLIM3Q53GG5 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC13.08□□□□□ -0.32
PDLIM3Q53GG5 AC125807.1-201ENST00000483097 614 ntBASIC13.08□□□□□ -0.32
PDLIM3Q53GG5 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC13.08□□□□□ -0.32
PDLIM3Q53GG5 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC13.08□□□□□ -0.32
PDLIM3Q53GG5 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
PDLIM3Q53GG5 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC13.08□□□□□ -0.32
PDLIM3Q53GG5 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC13.08□□□□□ -0.32
PDLIM3Q53GG5 U1.21-201ENST00000580816 167 ntBASIC13.08□□□□□ -0.32
PDLIM3Q53GG5 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC13.08□□□□□ -0.32
PDLIM3Q53GG5 AC017083.2-201ENST00000608069 979 ntBASIC13.08□□□□□ -0.32
PDLIM3Q53GG5 UMODL1-206ENST00000408989 5262 ntAPPRIS P4 TSL 1 (best) BASIC13.08□□□□□ -0.32
PDLIM3Q53GG5 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC13.08□□□□□ -0.32
PDLIM3Q53GG5 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
PDLIM3Q53GG5 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
PDLIM3Q53GG5 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
PDLIM3Q53GG5 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
PDLIM3Q53GG5 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
PDLIM3Q53GG5 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
PDLIM3Q53GG5 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC13.08□□□□□ -0.32
PDLIM3Q53GG5 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC13.08□□□□□ -0.32
PDLIM3Q53GG5 TMBIM7P-203ENST00000641617 1718 ntBASIC13.08□□□□□ -0.32
PDLIM3Q53GG5 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
PDLIM3Q53GG5 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC13.07□□□□□ -0.32
PDLIM3Q53GG5 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
PDLIM3Q53GG5 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
PDLIM3Q53GG5 FO538757.1-201ENST00000623083 1397 ntBASIC13.07□□□□□ -0.32
PDLIM3Q53GG5 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC13.07□□□□□ -0.32
PDLIM3Q53GG5 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC13.07□□□□□ -0.32
PDLIM3Q53GG5 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC13.07□□□□□ -0.32
PDLIM3Q53GG5 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
PDLIM3Q53GG5 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
PDLIM3Q53GG5 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC13.07□□□□□ -0.32
PDLIM3Q53GG5 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
PDLIM3Q53GG5 PPT1-215ENST00000641471 2368 ntBASIC13.07□□□□□ -0.32
PDLIM3Q53GG5 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC13.07□□□□□ -0.32
PDLIM3Q53GG5 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
PDLIM3Q53GG5 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC13.07□□□□□ -0.32
PDLIM3Q53GG5 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC13.07□□□□□ -0.32
PDLIM3Q53GG5 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC13.07□□□□□ -0.32
PDLIM3Q53GG5 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC13.07□□□□□ -0.32
PDLIM3Q53GG5 HAUS4P1-201ENST00000406739 1145 ntBASIC13.07□□□□□ -0.32
PDLIM3Q53GG5 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC13.07□□□□□ -0.32
PDLIM3Q53GG5 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC13.07□□□□□ -0.32
PDLIM3Q53GG5 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC13.07□□□□□ -0.32
PDLIM3Q53GG5 FAM185BP-201ENST00000443595 716 ntBASIC13.07□□□□□ -0.32
PDLIM3Q53GG5 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
PDLIM3Q53GG5 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC13.07□□□□□ -0.32
PDLIM3Q53GG5 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC13.07□□□□□ -0.32
PDLIM3Q53GG5 MDH2-205ENST00000461263 648 ntTSL 2 BASIC13.07□□□□□ -0.32
PDLIM3Q53GG5 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC13.07□□□□□ -0.32
PDLIM3Q53GG5 HILS1-202ENST00000545329 423 ntBASIC13.07□□□□□ -0.32
PDLIM3Q53GG5 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC13.07□□□□□ -0.32
PDLIM3Q53GG5 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC13.07□□□□□ -0.32
PDLIM3Q53GG5 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC13.07□□□□□ -0.32
PDLIM3Q53GG5 AC068137.2-201ENST00000605408 478 ntBASIC13.07□□□□□ -0.32
PDLIM3Q53GG5 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC13.07□□□□□ -0.32
PDLIM3Q53GG5 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC13.07□□□□□ -0.32
PDLIM3Q53GG5 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
PDLIM3Q53GG5 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC13.07□□□□□ -0.32
PDLIM3Q53GG5 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
PDLIM3Q53GG5 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
PDLIM3Q53GG5 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC13.07□□□□□ -0.32
PDLIM3Q53GG5 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
PDLIM3Q53GG5 AP003680.1-201ENST00000598970 3660 ntBASIC13.07□□□□□ -0.32
PDLIM3Q53GG5 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
PDLIM3Q53GG5 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC13.07□□□□□ -0.32
PDLIM3Q53GG5 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
PDLIM3Q53GG5 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC13.07□□□□□ -0.32
PDLIM3Q53GG5 AL133338.1-201ENST00000565695 1517 ntBASIC13.07□□□□□ -0.32
PDLIM3Q53GG5 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
PDLIM3Q53GG5 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
PDLIM3Q53GG5 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC13.07□□□□□ -0.32
PDLIM3Q53GG5 C8orf49-201ENST00000525043 1968 ntBASIC13.07□□□□□ -0.32
PDLIM3Q53GG5 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC13.07□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms