Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
CX3CL1P78423 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CX3CL1P78423 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CX3CL1P78423 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
CX3CL1P78423 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CX3CL1P78423 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC12.67□□□□□ -0.38
CX3CL1P78423 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC12.67□□□□□ -0.38
CX3CL1P78423 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
CX3CL1P78423 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
CX3CL1P78423 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CX3CL1P78423 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC12.67□□□□□ -0.38
CX3CL1P78423 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
CX3CL1P78423 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CX3CL1P78423 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CX3CL1P78423 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC12.66□□□□□ -0.38
CX3CL1P78423 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
CX3CL1P78423 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
CX3CL1P78423 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC12.66□□□□□ -0.38
CX3CL1P78423 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC12.66□□□□□ -0.38
CX3CL1P78423 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
CX3CL1P78423 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
CX3CL1P78423 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CX3CL1P78423 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
CX3CL1P78423 CETN4P-206ENST00000642099 2168 ntBASIC12.66□□□□□ -0.38
CX3CL1P78423 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
CX3CL1P78423 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CX3CL1P78423 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
CX3CL1P78423 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CX3CL1P78423 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC12.66□□□□□ -0.38
CX3CL1P78423 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
CX3CL1P78423 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
CX3CL1P78423 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
CX3CL1P78423 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
CX3CL1P78423 SPDYE17-201ENST00000412399 783 ntBASIC12.66□□□□□ -0.38
CX3CL1P78423 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC12.66□□□□□ -0.38
CX3CL1P78423 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC12.66□□□□□ -0.38
CX3CL1P78423 EEF1DP4-201ENST00000446006 880 ntBASIC12.66□□□□□ -0.38
CX3CL1P78423 FAM86GP-201ENST00000448322 971 ntBASIC12.66□□□□□ -0.38
CX3CL1P78423 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
CX3CL1P78423 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC12.66□□□□□ -0.38
CX3CL1P78423 AC125807.1-201ENST00000483097 614 ntBASIC12.66□□□□□ -0.38
CX3CL1P78423 AC067863.1-201ENST00000494933 530 ntBASIC12.66□□□□□ -0.38
CX3CL1P78423 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC12.66□□□□□ -0.38
CX3CL1P78423 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
CX3CL1P78423 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC12.66□□□□□ -0.38
CX3CL1P78423 AL079307.3-201ENST00000556114 283 ntBASIC12.66□□□□□ -0.38
CX3CL1P78423 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC12.66□□□□□ -0.38
CX3CL1P78423 AC015911.4-201ENST00000588022 1070 ntBASIC12.66□□□□□ -0.38
CX3CL1P78423 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC12.66□□□□□ -0.38
CX3CL1P78423 AL450472.2-201ENST00000603663 1156 ntBASIC12.66□□□□□ -0.38
CX3CL1P78423 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC12.66□□□□□ -0.38
CX3CL1P78423 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC12.66□□□□□ -0.38
CX3CL1P78423 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
CX3CL1P78423 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
CX3CL1P78423 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CX3CL1P78423 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC12.66□□□□□ -0.38
CX3CL1P78423 WARS-232ENST00000556645 2508 ntTSL 5 BASIC12.66□□□□□ -0.38
CX3CL1P78423 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CX3CL1P78423 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC12.66□□□□□ -0.38
CX3CL1P78423 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC12.66□□□□□ -0.38
CX3CL1P78423 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
CX3CL1P78423 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC12.66□□□□□ -0.38
CX3CL1P78423 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC12.66□□□□□ -0.38
CX3CL1P78423 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC12.66□□□□□ -0.38
CX3CL1P78423 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
CX3CL1P78423 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
CX3CL1P78423 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC12.66□□□□□ -0.38
CX3CL1P78423 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CX3CL1P78423 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CX3CL1P78423 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CX3CL1P78423 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
CX3CL1P78423 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CX3CL1P78423 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC12.66□□□□□ -0.38
CX3CL1P78423 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CX3CL1P78423 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
CX3CL1P78423 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC12.65□□□□□ -0.38
CX3CL1P78423 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
CX3CL1P78423 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
CX3CL1P78423 LCK-206ENST00000373564 2137 ntTSL 5 BASIC12.65□□□□□ -0.38
CX3CL1P78423 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC12.65□□□□□ -0.38
CX3CL1P78423 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC12.65□□□□□ -0.38
CX3CL1P78423 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
CX3CL1P78423 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
CX3CL1P78423 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CX3CL1P78423 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
CX3CL1P78423 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CX3CL1P78423 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC12.65□□□□□ -0.38
CX3CL1P78423 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC12.65□□□□□ -0.38
CX3CL1P78423 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CX3CL1P78423 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CX3CL1P78423 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
CX3CL1P78423 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
CX3CL1P78423 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
CX3CL1P78423 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
CX3CL1P78423 PON3-203ENST00000427422 894 ntTSL 3 BASIC12.65□□□□□ -0.38
CX3CL1P78423 KLF2P3-201ENST00000451977 1087 ntBASIC12.65□□□□□ -0.38
CX3CL1P78423 PHKG1P2-201ENST00000457537 863 ntBASIC12.65□□□□□ -0.38
CX3CL1P78423 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
CX3CL1P78423 SATB1-217ENST00000493952 626 ntTSL 3 BASIC12.65□□□□□ -0.38
CX3CL1P78423 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 73.4 ms