Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 C20orf181-201ENST00000623918 480 ntBASIC15.41■□□□□ 0.06
PKNOX1P55347 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC15.41■□□□□ 0.06
PKNOX1P55347 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
PKNOX1P55347 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC15.41■□□□□ 0.06
PKNOX1P55347 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PKNOX1P55347 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
PKNOX1P55347 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC15.41■□□□□ 0.06
PKNOX1P55347 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PKNOX1P55347 AC104581.4-201ENST00000623126 3052 ntBASIC15.41■□□□□ 0.06
PKNOX1P55347 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PKNOX1P55347 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PKNOX1P55347 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PKNOX1P55347 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
PKNOX1P55347 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
PKNOX1P55347 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
PKNOX1P55347 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC15.41■□□□□ 0.06
PKNOX1P55347 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
PKNOX1P55347 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
PKNOX1P55347 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PKNOX1P55347 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
PKNOX1P55347 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
PKNOX1P55347 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PKNOX1P55347 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
PKNOX1P55347 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
PKNOX1P55347 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PKNOX1P55347 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PKNOX1P55347 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PKNOX1P55347 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PKNOX1P55347 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC15.4■□□□□ 0.06
PKNOX1P55347 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC15.4■□□□□ 0.06
PKNOX1P55347 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PKNOX1P55347 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC15.4■□□□□ 0.06
PKNOX1P55347 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PKNOX1P55347 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC15.4■□□□□ 0.06
PKNOX1P55347 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
PKNOX1P55347 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PKNOX1P55347 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PKNOX1P55347 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PKNOX1P55347 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PKNOX1P55347 IMP4-203ENST00000409935 958 ntTSL 5 BASIC15.4■□□□□ 0.06
PKNOX1P55347 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC15.4■□□□□ 0.06
PKNOX1P55347 MKNK2P1-201ENST00000437526 628 ntBASIC15.4■□□□□ 0.06
PKNOX1P55347 ELP6-209ENST00000446787 894 ntTSL 3 BASIC15.4■□□□□ 0.06
PKNOX1P55347 TIMM8BP1-201ENST00000452384 211 ntBASIC15.4■□□□□ 0.06
PKNOX1P55347 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC15.4■□□□□ 0.06
PKNOX1P55347 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC15.4■□□□□ 0.06
PKNOX1P55347 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC15.4■□□□□ 0.06
PKNOX1P55347 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC15.4■□□□□ 0.06
PKNOX1P55347 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC15.4■□□□□ 0.06
PKNOX1P55347 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PKNOX1P55347 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC15.4■□□□□ 0.06
PKNOX1P55347 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC15.4■□□□□ 0.06
PKNOX1P55347 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC15.4■□□□□ 0.06
PKNOX1P55347 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
PKNOX1P55347 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC15.4■□□□□ 0.06
PKNOX1P55347 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
PKNOX1P55347 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
PKNOX1P55347 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
PKNOX1P55347 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
PKNOX1P55347 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC15.4■□□□□ 0.06
PKNOX1P55347 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC15.4■□□□□ 0.06
PKNOX1P55347 AP3S2-216ENST00000617003 1561 ntBASIC15.4■□□□□ 0.06
PKNOX1P55347 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PKNOX1P55347 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
PKNOX1P55347 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PKNOX1P55347 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC15.4■□□□□ 0.06
PKNOX1P55347 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PKNOX1P55347 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PKNOX1P55347 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PKNOX1P55347 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PKNOX1P55347 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PKNOX1P55347 KRT8P44-201ENST00000441609 1350 ntBASIC15.39■□□□□ 0.05
PKNOX1P55347 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
PKNOX1P55347 CNTNAP3P2-201ENST00000617175 3861 ntBASIC15.39■□□□□ 0.05
PKNOX1P55347 AC126365.1-201ENST00000578585 1514 ntBASIC15.39■□□□□ 0.05
PKNOX1P55347 UXT-AS1-201ENST00000590504 1525 ntBASIC15.39■□□□□ 0.05
PKNOX1P55347 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PKNOX1P55347 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC15.39■□□□□ 0.05
PKNOX1P55347 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
PKNOX1P55347 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC15.39■□□□□ 0.05
PKNOX1P55347 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PKNOX1P55347 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PKNOX1P55347 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC15.39■□□□□ 0.05
PKNOX1P55347 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PKNOX1P55347 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC15.39■□□□□ 0.05
PKNOX1P55347 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
PKNOX1P55347 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC15.39■□□□□ 0.05
PKNOX1P55347 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PKNOX1P55347 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC15.39■□□□□ 0.05
PKNOX1P55347 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PKNOX1P55347 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC15.39■□□□□ 0.05
PKNOX1P55347 AC055717.3-201ENST00000622967 595 ntBASIC15.39■□□□□ 0.05
PKNOX1P55347 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
PKNOX1P55347 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PKNOX1P55347 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
PKNOX1P55347 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PKNOX1P55347 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PKNOX1P55347 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PKNOX1P55347 AC232323.1-201ENST00000540724 2099 ntBASIC15.39■□□□□ 0.05
PKNOX1P55347 REXO1L5P-201ENST00000622260 2098 ntBASIC15.39■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 53.6 ms