Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC16.16■□□□□ 0.18
NEK3P51956 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC16.16■□□□□ 0.18
NEK3P51956 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
NEK3P51956 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC16.16■□□□□ 0.18
NEK3P51956 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC16.16■□□□□ 0.18
NEK3P51956 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC16.16■□□□□ 0.18
NEK3P51956 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
NEK3P51956 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
NEK3P51956 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
NEK3P51956 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
NEK3P51956 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
NEK3P51956 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC16.16■□□□□ 0.18
NEK3P51956 MECR-202ENST00000373791 2416 ntTSL 2 BASIC16.16■□□□□ 0.18
NEK3P51956 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
NEK3P51956 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
NEK3P51956 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC16.16■□□□□ 0.18
NEK3P51956 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
NEK3P51956 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
NEK3P51956 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC16.15■□□□□ 0.18
NEK3P51956 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
NEK3P51956 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC16.15■□□□□ 0.18
NEK3P51956 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC16.15■□□□□ 0.18
NEK3P51956 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
NEK3P51956 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
NEK3P51956 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC16.15■□□□□ 0.18
NEK3P51956 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
NEK3P51956 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
NEK3P51956 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
NEK3P51956 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
NEK3P51956 CICP24-201ENST00000605464 2705 ntBASIC16.15■□□□□ 0.18
NEK3P51956 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
NEK3P51956 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
NEK3P51956 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
NEK3P51956 TPO-203ENST00000346956 2923 ntTSL 5 BASIC16.15■□□□□ 0.18
NEK3P51956 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
NEK3P51956 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
NEK3P51956 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC16.15■□□□□ 0.18
NEK3P51956 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC16.15■□□□□ 0.18
NEK3P51956 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC16.15■□□□□ 0.18
NEK3P51956 TMPRSS11CP-201ENST00000453277 683 ntBASIC16.15■□□□□ 0.18
NEK3P51956 TAF8-206ENST00000472818 719 ntTSL 2 BASIC16.15■□□□□ 0.18
NEK3P51956 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC16.15■□□□□ 0.18
NEK3P51956 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC16.15■□□□□ 0.18
NEK3P51956 AC135586.1-201ENST00000539323 574 ntBASIC16.15■□□□□ 0.18
NEK3P51956 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC16.15■□□□□ 0.18
NEK3P51956 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
NEK3P51956 AC243562.2-201ENST00000561247 970 ntBASIC16.15■□□□□ 0.18
NEK3P51956 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC16.15■□□□□ 0.18
NEK3P51956 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC16.15■□□□□ 0.18
NEK3P51956 AC004840.1-201ENST00000636359 365 ntBASIC16.15■□□□□ 0.18
NEK3P51956 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
NEK3P51956 AC105250.1-201ENST00000509378 2057 ntBASIC16.15■□□□□ 0.18
NEK3P51956 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC16.15■□□□□ 0.18
NEK3P51956 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
NEK3P51956 AC090616.6-203ENST00000579186 1945 ntBASIC16.15■□□□□ 0.18
NEK3P51956 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
NEK3P51956 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC16.15■□□□□ 0.18
NEK3P51956 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC16.15■□□□□ 0.18
NEK3P51956 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
NEK3P51956 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC16.15■□□□□ 0.18
NEK3P51956 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
NEK3P51956 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
NEK3P51956 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC16.15■□□□□ 0.18
NEK3P51956 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.18
NEK3P51956 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
NEK3P51956 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
NEK3P51956 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
NEK3P51956 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
NEK3P51956 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
NEK3P51956 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
NEK3P51956 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC16.14■□□□□ 0.17
NEK3P51956 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC16.14■□□□□ 0.17
NEK3P51956 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC16.14■□□□□ 0.17
NEK3P51956 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC16.14■□□□□ 0.17
NEK3P51956 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
NEK3P51956 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
NEK3P51956 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC16.14■□□□□ 0.17
NEK3P51956 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
NEK3P51956 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
NEK3P51956 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
NEK3P51956 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
NEK3P51956 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
NEK3P51956 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
NEK3P51956 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
NEK3P51956 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
NEK3P51956 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
NEK3P51956 PIN1P1-201ENST00000412108 996 ntBASIC16.14■□□□□ 0.17
NEK3P51956 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC16.14■□□□□ 0.17
NEK3P51956 SPTLC1P1-201ENST00000447199 261 ntBASIC16.14■□□□□ 0.17
NEK3P51956 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC16.14■□□□□ 0.17
NEK3P51956 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC16.14■□□□□ 0.17
NEK3P51956 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC16.14■□□□□ 0.17
NEK3P51956 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
NEK3P51956 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC16.14■□□□□ 0.17
NEK3P51956 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC16.14■□□□□ 0.17
NEK3P51956 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC16.14■□□□□ 0.17
NEK3P51956 AC044860.1-202ENST00000559481 777 ntBASIC16.14■□□□□ 0.17
NEK3P51956 COX11-202ENST00000571584 1108 ntTSL 2 BASIC16.14■□□□□ 0.17
NEK3P51956 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC16.14■□□□□ 0.17
NEK3P51956 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms